AMCG00005535 (LOC107690431,LOC107592631,LOC107743685)


Basic Information

Item Value
gene id AMCG00005535
gene name LOC107690431,LOC107592631,LOC107743685
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 4219881 ~ 4227690 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005535
TTCATGCTGAGCTGTGTCTTCCCTCAGCGGCCGGCCTCAGGGGACGTGTCGGTGACCAGTCTCCACGCGGGCGGAGAGGCCTACTTCTACTGCTACACCGGCTACCAGCTTCAGGGCCCCTCGACCCTCACCTGCCGCAATGCCACCACCCCCTACTGGAGCGGCAAGGAGCCACAGTGCCTGGGCAAGAACGCCACCGTGGGCCGCATCGTCTCCCCTGGATTCCCGGGCAACTACAGCAACAACCTGACCTGCCACTGGGTGCTGGAGGCCCCCGAGGGACAACGGCTGCACATCCACTTCGAGAAGGTGGCCCTGTCCGAGGATGACGACAGGCTTTTGATAAAGAACGGGAACAACATCGATTCCCCGCCGGTGTACGACTCCTACGAGGTGGAGTACCTGCCCATTGAAGGGATAGTCAGCACCACACGGCACTTCTTTGTGGAGCTCACCACCGATGGGTCAGGAACGGCTACCGGGGCGGCTCTCAGATATGAAGGTATCACGACCGACGGCACCGACGTGACGTACGCCGTGGGCACGGTGGTGGAGTTCGCCTGCGACCCCGGGTACACCCTGGAGCAGGGCTCCATCATCATCGAGTGCATGGACCCCAGCAACCCCCAGTGGAACGAGACAGAGCCCGCCTGCAGAGCTGTGTGCAGTGGAGAGATCACAGACTCGGCAGGAGTTGTGTTGTCCCCCAACTGGCCAGAAGCCTACGACAAGGGTCAGGACTGTATCTGGGGGATACACGTGGAGGAAGACAAGAGAATCATGCTGGACATCCAAGTGTAA

Function

NR:

description
PREDICTED: seizure protein 6-like isoform X4

GO: NA

KEGG:

id description
K24363 SEZ6; seizure protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005535 True 801 mRNA 0.61 5 4219881 4227690

Neighbor

gene id symbol gene type direction distance location
AMCG00005567 LOC107718289,LOC105897181 coding upstream 226602 3918356 ~ 3993279 (+)
AMCG00005556 LOC107690467,LOC107718289,LOC107664918,LOC107743726,LOC108425789,LOC107585604 coding upstream 330220 3886333 ~ 3889661 (+)
AMCG00005557 NA coding upstream 341694 3877414 ~ 3878187 (+)
AMCG00005559 NA coding upstream 412268 3799267 ~ 3807613 (+)
AMCG00005558 NA coding upstream 431303 3766014 ~ 3788578 (+)
AMCG00005536 NA coding downstream 12518 4240208 ~ 4250848 (+)
AMCG00005534 phf12 coding downstream 36725 4264415 ~ 4280445 (+)
AMCG00005537 NA coding downstream 77935 4305625 ~ 4310148 (+)
AMCG00005544 lhx1a,LOC105897175,LOC105023804,LOC106613102,LOC106581220,LOC107685180 coding downstream 251756 4479446 ~ 4490819 (+)
AMCG00005545 LOC103910010 coding downstream 267918 4495608 ~ 4520105 (+)
G152764 NA non-coding upstream 458054 3723913 ~ 3761827 (+)
G152657 NA non-coding upstream 959452 3260210 ~ 3260429 (+)
G152656 NA non-coding upstream 1019694 3199332 ~ 3200187 (+)
G152655 NA non-coding upstream 1032893 3183821 ~ 3186988 (+)
G152644 NA non-coding upstream 1129226 3071950 ~ 3090655 (+)
G152866 NA non-coding downstream 31176 4258866 ~ 4260635 (+)
G152906 NA non-coding downstream 64340 4292030 ~ 4292882 (+)
G152943 NA non-coding downstream 304631 4532321 ~ 4534824 (+)
G153080 NA non-coding downstream 962837 5190527 ~ 5190796 (+)
G153082 NA non-coding downstream 968098 5195788 ~ 5201535 (+)
AMCG00005498 lyrm9,LOC102789908 other upstream 949037 3266374 ~ 3270844 (+)
G152588 rpl23a other upstream 1370273 2845217 ~ 2849608 (+)
AMCG00005481 dynll2a,LOC107554284,LOC103397138 other upstream 1709205 2503910 ~ 2510676 (+)
AMCG00005429 ywhae,LOC106567579,LOC105005922 other upstream 2273081 1929455 ~ 1946800 (+)
G152337 NA other upstream 2415978 1799811 ~ 1803903 (+)
AMCG00005538 NA other downstream 54827 4282517 ~ 4305156 (+)
AMCG00005546 acaca,LOC107691719 other downstream 332523 4560213 ~ 4563020 (+)
AMCG00005583 LOC106603777,LOC105895333,LOC108428505 other downstream 987123 5214813 ~ 5241776 (+)
AMCG00005647 NA other downstream 2206831 6434521 ~ 6437078 (+)
AMCG00005667 NA other downstream 2260028 6487718 ~ 6488782 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000072_02653471_02758823 SEZ6, SEZ6B coding CI01000072 null 2653471 ~ 2758823 (-)