AMCG00005610 (LOC101160255,LOC103021402,LOC100700540,LOC105025792)


Basic Information

Item Value
gene id AMCG00005610
gene name LOC101160255,LOC103021402,LOC100700540,LOC105025792
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 5920200 ~ 5931156 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005610
CCTTTTTGGAGTGATGACGCAAGCCGGGAGAGCTGGGGGGGCGTCCCGGCGGCAGGCGCAGACGGcaggcagcagctgcagcatcCACACCGCGCCGCGTTTCGCTGCACCGCGACtgacatttccacatttcctCCCCGAAAAGCCCGACTCTCGCCTCGACCACCGACGCCGGAAAACATGGTAGACCGCGAGCAATTGGTGCAGAAAGCCAGGCTGGCCGAGCAGGCGGAGAGATACGATGATATGGCAGCTGCCATGAAATCGGTGACCGAGCTGAACGAGGCCCTGTCCAACGAGGAGAGGAATCTTCTCTCGGTGGCCTACAAGAACGTGGTGGGGGCGCGGCGGTCATCGTGGCGTGTCATCAGCAGCATCGAGCAGAAGACCTCGGCAGACGGCAACGAGAAGAAGATCGAGATGGTGCGGGCGTACCGCGAGAAGATTGAGAAGGAGCTGGAGGCCGTGTGCCAGGACGTGCTCAACCTGCTGGACAACTACCTGATCAAGAACTGCAGCGAGACGCAGTACGAGAGCAAGGTGTTTTACCTGAAGATGAAGGGCGACTACTACCGCTACCTGGCCGAGGTGGCCACGGGGGAGAAGCGGGCCACGGTGGTGGAGTCTTCCGAGAAGGCCTACAGTGAGGCGCATGAGATCAGCAAGGAGCACATGCAGCCCACCCACCCCATCCGCCTGGGCCTGGCCCTCAACTACTCAGTTTTCTACTACGAGATCCAGAACGCCCCCGAGCAAGCCTGCCACCTGGCCAAGACCGCCTTCGACGACGCCATCGCCGAGCTAGACACCCTCAACGAGGACTCCTACAAAGACTCTACTCTCATCATGCAGCTGCTGCGAGACAACTTGACACTGTGGACAAGCGACCAGCAGGACGACGACGGAGGGGAGGGCAACAATTAAGCCAGTGGCCTTGGCAAGCCTCTTAGCCGACGCTACTACCGCAAGCagtctttatttttccacaagtttaatgaaaaaaaattgagaggaatggggagggggggagtaaACCTTCCagtagttaaaaaaagaaaaaaaaaagaaaatagattaaaaaaaaaaagaaaacaaaacaccctcCTCCTTCTTGATCGCCTCTTCGACATTTGCCAAAACACCACTTAGAGGAAAAGTCAgtcaagtcagtcagtcagtcagtcaagtcagttagtcagtcaaGAGTGGCTGTTGGGTTGGAATGGCAGCCTCACACTGGCATATGGACTGTTCTTGTAGTACAAACAAAGTGGAGCTGCTTATTTAACTTTAGGGGGGTAAGAAGACttaaagtgagagagagagaaaaggtagAACAAAAACTTTAATGTGATAGCCTCGCTAAAATTAGTTCACAATGGTTCCAGTAAGTATGACGCAGGGCCTGTTGGGTCCATTTTGGAATCCAGAGATCGCCCATTCACATGGTTGGTCTATCGCCAACGTACTAAATTTGAGAGAATGCTCTAAATCTAAATTGGGTTTGAGTGTCATGCGTTAACTATATACCAGTTAATATTCAGCATTGAAGTAATGTTTGACAGGTACAGGCAGGATATTGTCAGTACAAGGATCAGTTGAGTCCTAATATCAAGTCAATTGTCTTTGCGTTTTCAAGAGTAACGTTCACCGTTACGTTTTTTGCCGGTTGCCCCAAAATCTGGCGTTCTTCACACCCAAGTCCTTAAATAGGTAACTATACTGATTCAGTCCCTGGCCCTTGGTAACTTTCCATCCTTTACTGGAACCATGAGCTCTTTTCGAGGTAAAGGTACATTTGAAGGCAAAGAAGTGGCGAGAAAAATGGGATCTTAAAGCAGCTTCGaggtttgtggttttattttaatttgttttgttttaattttaattttttaaagaaatgcactTGCCTATTATACTGTTTCTTCAGTGTAAGACGATTACTGCTCCAATATTCTCGATACTACAATATTGTGCATGCTAGTGAcgtatttatatacagtagCTTGACTTTATTAACTTATACTGTAGGTGTTATGTATTCCTATGAACAAGAAATAACTAGACTTCAAACTTTTCAAACtagtttttccatttcctttttttcttttgttcgtttctctttatttttatttgctaaaGTACGCTAAGCCAAAACAGTGATCGTTGACAATAAATTGATCTGTTATGGACGTTGCTATAGTGACatgcaattattgtatttgatttgttaCACAAAAgcggaagaaaaaaagaaaaagaaaaaaaaaaaa

Function

NR:

description
14-3-3 protein gamma-B

GO:

id name namespace
GO:0019904 protein domain specific binding molecular_function

KEGG:

id description
K16198 YWHAG_H; 14-3-3 protein gamma/eta

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005610 True 2273 mRNA 0.47 2 5920200 5931156

Neighbor

gene id symbol gene type direction distance location
AMCG00005605 NA coding downstream 168762 5748776 ~ 5751438 (-)
AMCG00005606 NA coding downstream 210745 5666860 ~ 5709455 (-)
AMCG00005625 NA coding downstream 406806 5508252 ~ 5513394 (-)
AMCG00005575 NA coding downstream 452364 5460919 ~ 5467836 (-)
AMCG00005576 LOC106602867,LOC107597455 coding downstream 475590 5444161 ~ 5444610 (-)
AMCG00005611 NA coding upstream 5659 5936815 ~ 5947317 (-)
AMCG00005601 supt4h1 coding upstream 139036 6070192 ~ 6072666 (-)
AMCG00005598 hpda,LOC108413266,LOC108260398 coding upstream 227569 6158725 ~ 6170298 (-)
AMCG00005629 NA coding upstream 315994 6247150 ~ 6255757 (-)
AMCG00005638 NA coding upstream 357313 6288469 ~ 6296947 (-)
G153272 NA non-coding downstream 119294 5800648 ~ 5800906 (-)
G153248 dhx33 non-coding downstream 171628 5741492 ~ 5748572 (-)
G153236 NA non-coding downstream 271491 5648358 ~ 5648709 (-)
G153178 NA non-coding downstream 430601 5487309 ~ 5489599 (-)
G153143 NA non-coding downstream 564503 5353353 ~ 5355697 (-)
G153313 NA non-coding upstream 116974 6048130 ~ 6048470 (-)
G153324 NA non-coding upstream 137631 6068787 ~ 6069014 (-)
G153373 NA non-coding upstream 302972 6234128 ~ 6234359 (-)
G153374 NA non-coding upstream 303392 6234548 ~ 6234858 (-)
G153375 NA non-coding upstream 304027 6235183 ~ 6235409 (-)
G153130 NA other downstream 618002 5300769 ~ 5302198 (-)
AMCG00005539 NA other downstream 1627329 4284717 ~ 4292871 (-)
AMCG00005560 LOC106568075,LOC104946632,LOC106603282 other downstream 2050991 3850136 ~ 3869209 (-)
AMCG00005525 LOC106567758 other downstream 2287488 3606961 ~ 3632712 (-)
G152645 NA other downstream 2829486 3071860 ~ 3090714 (-)
G153342 NA other upstream 150079 6081235 ~ 6082866 (-)
AMCG00005628 LOC107090330,LOC102220786 other upstream 301003 6232159 ~ 6234028 (-)
AMCG00005674 NA other upstream 559099 6490255 ~ 6496571 (-)
AMCG00005685 NA other upstream 1178062 7109218 ~ 7145807 (-)
G153733 auts2 other upstream 1854398 7785554 ~ 7788321 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_009084 ywhag2 coding NC_007126.7 CM002899.2 15348490 ~ 15357178 (-)
grasscarp (Ctenopharyngodon idella) CI01000171_00493834_00494490 YWHAG.S, 143G2, 143G1, YWHAG.L, YWHAG2, YWHAG, YWHAG1 coding CI01000171 null 493834 ~ 495957 (+)