AMCG00005841


Basic Information

Item Value
gene id AMCG00005841
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10982585 ~ 10986224 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005841
ATGCCTAGCCCCCTCTTCCACCCAGACATCATGGATGCCGAGGCAGGGTTGAGCAGCCCCGACCCCGAGTCCCAGGACCCCGAGGGCCAGCGGGAGGCTCTTCGCTACGCCCTGGACCGGCTCTCGCTTCTGGCCGGGGAGCGGATCGActgcggcggcggcggcgcAGGGCTGGACCCGACCCGTGTCCAGGACCCCGCTGTCCACGGGTCCCCCTGCGGCGGGGTCGGGGGAGGAGGCTTTTCCAGCCTGCAGATGCTCGATCACCACGGTGGCGGCTCCCCCGGCTCGCCGAGCTCCTGCTCCCCGCCGCCGGACATCTTCTGTCCCACCGGTTACCCGATGGTTCATGCCATGCTGGCGGACGGGGGCCGCAAGAGGAGCGTGAACATGACCGAGTGCGTCCCGGTGCCCAGCTCCGAGCACGTCGCCGAGATCGTTGGCAGACAAGgcTGCAAGATCAAAGCCCTGCGCGCCAAGACCAACACCTACATCAAGACGCCGGTGCGGGGCGAGGAGCCTGTGTTCATCGTGACCGGCCGGCGGGAGGACGTGGAGACGGCCCGGCGCGAGATCCTGGCGGCCGCTGACCACTTCTCTATGATCCGCGCCTCGCGCTGCAAGGCCGGGGCTGGAGGGGGCGGCGCAGGAGCTGCTGCGGCAGGAGGTGGGGGAGCAGGAGgcggcggaggaggagggggcagtGGGGGAGGAGGCTTGCCAGTGCCTCCCAGTTTGCCCGGGCAGACCACCATCCAGGTGCGCGTGCCCTACAGGGTGGTGGGGCTGGTGGTGGGTCCCAAGGGTGCCACCATTAAGCGTATCCAGCAGCAGACGCACACCTACATCGTGACGCCCAGCCGCGACAAGGACCCCGTGTTTGAGGTGACCGGCATGCCCGAGAACGTGGACCGCGCCCGCGAGGAGATCGAGACGCACATCACACTGCGCACCGGCGCCTTCCTGGACCTGGGGGGGGACAACGACTTCCACAGCAACGGCACCGACCACCACGCCACGCTGGGGGCCCGGACGGGCGGGGCGGCCGTCTTCCACAACGGAGAGGCACAGTACAGCGGAGGAGGTGCCGGGGGCCGGGCAGGTCTCCCCGAGAGCGGCAGTCCGACCAGCCCCTTCAGCACCGGCAGCGGGGGCGGTGGCGCTGGGGGGCTGGAGGAGCTGGGGTTCGAGTTTGGCAGCGGGAACATCTGGGCGCCCTTTGTGAATGGATCCGGGGCGGCGCCGGCGCAGCAGCAGGCACAGCAGCAGAGACGCAACAGCAGCGGCCTGGCTGGGGGGGGCGGCGCCCTGACGCCCCGGCTGTCCCCCACCCTGCCGGCCGAGCACCTGGAGCACACGCTGGCCCGGCGCGCCCAGAGCGACCCCCTCAGCGCCCTGTGCTGGCTGGCGGGGGGCAGCACGGCCTCCTTCTCCGGgggcagcagtagcagcagcaccGGCTATTCCTCCTCGTGCTCCGCCTCCTCACTGCCCGGCGGCTCCCCGACCGACTCCgagggggggggcagctgtGGCGGTCTGGGGGGGGCACTCCTGGGTCGACTGAAGGGCCCGGGTTCGGGCCTGACGGGCGGGGTGGCTGGCAAGGACTGCTGCCTGTGCTTCGAGAGCGAGGTGACAGCGGCGCTGGTGCCCTGCGGACACAACCTGTTCTGCATGGACTGCGCCGGGCAGATCTGCCAGTCTGCCGAGCCGCACTGCCCCGTCTGCCACACCCCTGCCACGCAGTGCATCCGCATCTTCTCCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005841 True 1770 mRNA 0.71 3 10982585 10986224

Neighbor

gene id symbol gene type direction distance location
AMCG00005846 LOC108230728,LOC100701936,LOC102800276,LOC102208033,LOC101482435,LOC106613769,LOC104940954 coding downstream 147 10976242 ~ 10982438 (-)
AMCG00005847 NA coding downstream 6443 10975406 ~ 10976142 (-)
AMCG00005844 NA coding downstream 7773 10966428 ~ 10974812 (-)
AMCG00005870 btbd2,LOC108435919,LOC108427161,LOC103376164 coding downstream 64770 10913335 ~ 10917815 (-)
AMCG00005871 NA coding downstream 80302 10897007 ~ 10902283 (-)
AMCG00005842 mbd3,LOC106613771,LOC105011554,LOC108430109,LOC101480296,LOC103354193,LOC104920733 coding upstream 1928 10988152 ~ 10994321 (-)
AMCG00005843 NA coding upstream 27453 11013677 ~ 11031084 (-)
AMCG00005845 NA coding upstream 77804 11064028 ~ 11077614 (-)
AMCG00005814 map2k2 coding upstream 96274 11082498 ~ 11093542 (-)
AMCG00005852 NA coding upstream 194710 11180934 ~ 11190305 (-)
G154675 NA non-coding downstream 163869 10802564 ~ 10818716 (-)
G154642 NA non-coding downstream 288620 10690148 ~ 10693965 (-)
G154575 NA non-coding downstream 406083 10575970 ~ 10576502 (-)
G154400 NA non-coding downstream 837654 10144483 ~ 10144931 (-)
G154399 NA non-coding downstream 843660 10137428 ~ 10138925 (-)
G154723 NA non-coding upstream 11553 10997777 ~ 10999382 (-)
G154745 NA non-coding upstream 15450 11001674 ~ 11078201 (-)
G154782 NA non-coding upstream 220807 11207031 ~ 11208176 (-)
G154791 NA non-coding upstream 297904 11284128 ~ 11284398 (-)
G154817 NA non-coding upstream 323474 11309698 ~ 11319984 (-)
G154677 ef2,eef2,LOC106613766,LOC101482186,LOC107384141,LOC108427162,LOC108414462,LOC102796634 other downstream 69840 10843841 ~ 10912745 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 116789 10849515 ~ 10865796 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other downstream 230471 10738544 ~ 10752114 (-)
AMCG00005862 NA other downstream 431230 10543534 ~ 10551355 (-)
AMCG00005850 NA other downstream 629803 10295599 ~ 10352782 (-)
AMCG00005876 oaz1,oaz1s other upstream 334036 11320260 ~ 11325068 (-)
AMCG00005877 sf3a2 other upstream 350371 11336595 ~ 11339135 (-)
AMCG00005879 dot1l,LOC106920479 other upstream 363021 11349245 ~ 11360874 (-)
AMCG00005875 NA other upstream 388251 11374475 ~ 11376538 (-)
AMCG00005989 NA other upstream 1683032 12669256 ~ 12675994 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000077_00011450_00012795 MEX3D coding CI01000077 null 11420 ~ 12795 (-)