AMCG00005871


Basic Information

Item Value
gene id AMCG00005871
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10897007 ~ 10902283 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005871
agggttaTGATGGGATGGAGCTGTTGGACCTGCTGTTCGATCAAACTGATGGAATCCTGCGCAACGAGGGCTTTGGGCGTCATGGCAACCCAAActggccaatcacagagcaCCCCttGCTGGTCCCTGGGGACGGAGAAGAGGAGGAGTTCTTCAATGCTCTTCTCAGTGGCAGTGACTCGGTCTCTGACTCCCCCTTGTGGTCGCCGGCGCCCAGTGACAGTGGGATCAGCGAGGACCCCCAGTCCGACCAGCTGGACAGCCCCCCGCCCTGCGCCCCGCCCGACAGCCCGCCCCTCGACTACCCCTCCGCTGTCCTACCTGCACAGAGCATGGACACCCTGGAGCCAGACGTTTCCATCGACCTGGGGTGTGCTAGCTGTGTGGCCACAGATGGCTGGGACTCTGGTTTCTTCAATGGGAGGCAGGGCCAGACTGGCCAGACCGGACACAACCATCACAGTGTCCAGATGCCACCCAGCTTCCCACTGACCGTGAAGGACCTGCTGCTATCCGGGAACGCGGAGCCGGAGCTGGTTCTGAATGAGGATGAGAAGAAGCTGCTGGCCAAAGAGGGGGTCAGTCTGCCCAGCCAGCTGCCCCTCACCAAGtacgAGGAGCGGATCCTGAAGAAGATTCGCAGGAAGATCCGGAACAAGCAgtcTCTGGTGGAGCAGATGCGCAGGCTGCAGGCTCTGGTGATGAACAGTTCTCGTAAGACTGCGCAGACGGGCACCTGCATCATGGTGCTGGTCCTGTCCTTCTGTCTGATCCTGTTCCCCAGTTTGCAGCCATTCTCTGACAGCAAACTGAGCCAGGAGGGAGACTTCAGCCCTGTCAGAGTCCAGTCCCGGTCGCTGCACGCCATGGAATCCTCGCGGGTGTCTCACCACGCCGTCGCTGTGGACCACGCCTACTCCACAGCTCCAGAATCCTCCGGGCAGCCGGGAGGCGAGGGGGGGAAGGAAGGGGCCGCATTGACATCATTCGACAAGCTGCGAGAGGGGAGTGACTTCCCCCTGCCGGGCCCCGACTCCACCCACCTCAACCACACCCAGGATCTGGAAGGTAGGGGGTATCACCCCGGGGACCCCATCACCGGGCACGTCGCCACAGTGACCTGGACCGAGCGGCACGGCCGGGACACGCGCCTCAATAGCCACGCCGACGAGATGTGACAAAGGAGGCAGGAGCCCTGATGTTGATCAGCACTCTGTCCCCGTCACTGCTCTTGTTAACGCTGTATTCTGTCCCTACAtttcttgtctgtttttttatatgatattattttgtattggatTAGTCTTTTAGGATTTAGCGAGACACTGAGGTACAGATATGGATTAATGATAAATATGtgaagttttaattatttaaagatttctGTCAGATTCAGGGGGACGTTGCTCAGGGGGGGTTTTAGTATTCCTACCAGCGGCGGCCAAGAGGCGTGAGAACAGAAGAGCCATGCTTACAGTCGGAGATTGCCTCTGCAGTGTGTGGGGGTGGCGGGGCACCGATGCCCAGCCCTCACCCACCCGGCCAGCCAGTCTGGAGTCACTGCCCAGCACCCTGGCCACTGGGTTCCTGCTTACAAGAATGAAAGAACAAATCCATCTCTTGATTTGAAATGTCGCCGCTTGCCACGTCAGGCCAGATGAATAAGGATGAATCACTGCTGTTCGATCGTGTGTTCAGTTTGAGCCAACATGGCCCCCGCGGGCCACAGCTTCTTCCCCCTGCAGGCTGTGTGGGCTTCGGGGAGCGCACAGATGGGGTTGCTGTATAAACAGTAATAGACGTTCAAATGGTGGCCGTTGAAGCTGGACCGGGATGAGAATTGACtgtaaaaggttttattttgaaaggttttACTTTTTCCCTCTGAGCCCTGTGGCTGtattctgtgttgtgttttgtaagaTGTCAATGTCATACACAATACAGTGCCTAAAGAAAGTCTACAGCCTCTTTTTTcactttgtgttgtgttgagttttatgcatttactgtaaatgaggatttttccccccatttatctacacaccgtactccacactgttaaggggacaAAAGTTTGTATTgtgggaaaatataaataaaaaaacaacaactgaaatatcataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005871 True 2127 mRNA 0.55 8 10897007 10902283

Neighbor

gene id symbol gene type direction distance location
AMCG00005872 NA coding downstream 4705 10890557 ~ 10892302 (-)
AMCG00005832 NA coding downstream 17997 10870602 ~ 10879010 (-)
AMCG00005827 NA coding downstream 27075 10867463 ~ 10869932 (-)
AMCG00005829 NA coding downstream 59037 10829990 ~ 10837970 (-)
AMCG00005830 NA coding downstream 68936 10818870 ~ 10828071 (-)
AMCG00005870 btbd2,LOC108435919,LOC108427161,LOC103376164 coding upstream 11052 10913335 ~ 10917815 (-)
AMCG00005844 NA coding upstream 64145 10966428 ~ 10974812 (-)
AMCG00005847 NA coding upstream 73123 10975406 ~ 10976142 (-)
AMCG00005846 LOC108230728,LOC100701936,LOC102800276,LOC102208033,LOC101482435,LOC106613769,LOC104940954 coding upstream 73959 10976242 ~ 10982438 (-)
AMCG00005841 NA coding upstream 80302 10982585 ~ 10986224 (-)
G154675 NA non-coding downstream 78291 10802564 ~ 10818716 (-)
G154642 NA non-coding downstream 203042 10690148 ~ 10693965 (-)
G154575 NA non-coding downstream 320505 10575970 ~ 10576502 (-)
G154400 NA non-coding downstream 752076 10144483 ~ 10144931 (-)
G154399 NA non-coding downstream 758082 10137428 ~ 10138925 (-)
G154715 NA non-coding upstream 77275 10979558 ~ 10983480 (-)
G154723 NA non-coding upstream 95494 10997777 ~ 10999382 (-)
G154745 NA non-coding upstream 99391 11001674 ~ 11078201 (-)
G154782 NA non-coding upstream 304748 11207031 ~ 11208176 (-)
G154791 NA non-coding upstream 381845 11284128 ~ 11284398 (-)
AMCG00005831 shdb,LOC107719565,LOC107676987,LOC107729709,LOC103027120,LOC106584413,LOC108439278 other downstream 31211 10849515 ~ 10865796 (-)
AMCG00005839 LOC103367321,LOC107729686,LOC103398303 other downstream 144893 10738544 ~ 10752114 (-)
AMCG00005862 NA other downstream 345652 10543534 ~ 10551355 (-)
AMCG00005850 NA other downstream 544225 10295599 ~ 10352782 (-)
G154250 NA other downstream 1462067 9425290 ~ 9434940 (-)
AMCG00005876 oaz1,oaz1s other upstream 417977 11320260 ~ 11325068 (-)
AMCG00005877 sf3a2 other upstream 434312 11336595 ~ 11339135 (-)
AMCG00005879 dot1l,LOC106920479 other upstream 446962 11349245 ~ 11360874 (-)
AMCG00005875 NA other upstream 472192 11374475 ~ 11376538 (-)
AMCG00005989 NA other upstream 1766973 12669256 ~ 12675994 (-)

Expression


Co-expression Network