AMCG00005868


Basic Information

Item Value
gene id AMCG00005868
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10919948 ~ 10923547 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005868
ATGTCCCAGAACACTAAACACCAGCACGGCGGCGCTGCTGACCCCCCTCGGAGCCCTGCTCTGAACGGGGGGGTGTTTATCGTGGGGGGGGTGAAGGCGCCGGTGACCGGCTACGTGCGCTTCCTGAATGAGCGCCGGGAGCAGCTGCGCGCCCAACACCCTGACCTGCCCTTCCCAGAGATCACCAAGAGACTGGGGGCCGAGTGGAGCCACCTCGCCCCCCCTGACAAGCAGGCGGAGCGGGAGAAGCAGCAGTACGTCCGCGAGCTGAAGGAGTACCAGCAGAGCGAGGCCTTCCGGCTCACTGCGGCCAAGATCCAGGACAAGAAGGTCAAGAGAGaaGAGCCCACATCTGTGATCATCAACGCCTCGGGGTCGGGGCAGAAGGGCGTTGAGCTGTCCGACCGCTTCTGGAAGTTCGACGTTCCCATCTTCACGGAGGAATTCCTAGACCAGAACAAAGCGCGGGAGGCGGAGCTGCGGCGGCTGCGCAAGGCCAACGTGGAGTTCGAGGAGCAGAACGCCGCGCTGCAGAAGCACATCGCCGACATGCACAACGCCAAGGAGAGGCTGGAGGCGGAGCTGGGCCAGGACGAGCGGCGCACGCAGGCCCTGCACAGACGCCTGCTCTCCATCAGACACTCCCTCACTGCCAGCCTGGCCTCCGTGCCCCTGCCAGgctcTGGAGAGACCCCCTCCCTGGGTACACTGGACTCGTACATGAGCCGCTTGTGCAGCGCCCTGGAGAGCAGCCCCCACGAGCACCGCGGCCTGGTCTCGCAGCTGCAGGACGTGCTGGCACATCTGGACAGTGACAAGCTGTGAGTGGACCATGTGGGCTCTTCCTCCtttcctcccttcctcccctCCACATCCTTCCCGTCTCCTGCCCTGAACCCGGCAGTACCATCCTGTAAACCGGAGGGAGCGTTCTCCACAGCAGTGGGAGAATTCCAGTCCGGTCCTGGTGGGTCGCAGGAGGCCTTTCTACATCAATATCTGCATTCAGACATAGGAAAGGACTTTAATTGCTTgagttaattgaataattggttcaattaactGATTTTGGAATCTTAAGAGCTCTCTGGCTCGCCAGGACTGTTTACCAAGGACACTGgtataaataacacacacatgaTGTAGACGCTGTGGTTGTTGGTGCTACTGTGTGCAGTGAGGGGAGAACAGgcgtctgtttgtgtgtttcggTGAAGGAGCCGCCCCTCTCGGCTGCCTGGCCTCGCAGCGATAACGATAATCAGTAATCAATAATCGGTAATCAGGTTGTTGTTTCGTTTTTTTGGGCGGTGGGGTGTTGTTATCGGTCCAACACTAAGATATGAAGACAggcttttaaatatacatgtaaacaatTGTATTCTTCACCACTCCCCCGCTCTCTTTTTACAGGtgcagaaaagagagagagagagagagagagagagagagattaatagaGTGGAGATGCAACTGAAAAAagacattaatttaaacatagTCTATCAGCCTTTGCTATTGGGGGTGAGTCCGGCAGGGTTCATGTGGGTCTCTTTGTCGGTCAGTCAAACCACTCTATGAAATTGTACAGTTTCTTcatttctatttattaattttatttattaattaatttagctgtTGTAGGGTGGCTTTAAGAAGccaaactaaaaatactttcctgaatatacatgaattaattaataaacaaaatcaatgaatTATTTTACAGGAATTCAGCTACACATTTTGCCTCAGATTGCTTTAacccctccacctcctcctgcCACACACACTATTTTTCTCAGATTTTTTCAATCAAGTGATTAATTCTTGACTGTTAATTGAATCATGTCATGATGTTTATGTTGCAGCTGTAGTTATTCACATTGGGTAGTAGATGGGCAGGGAGGGGATGGGGGgcgagggagagaggagggtgtATAACTAGTCTATTGATAAAGATctgcatgcatttattattctcattttttaattataataatgaccattattgtttctgttgttatttAACTTTTGTACCCTGGTGACCAAATTAAGTCATTGAGTTAGTAATACTGGAGAAATATCAGAACTGAAAGCTAACATATaaagc

Function

GO: NA

KEGG:

id description
K24650 HMG20B; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005868 True 2113 mRNA 0.50 9 10919948 10923547

Neighbor

gene id symbol gene type direction distance location
AMCG00005867 eef2b,ef2,LOC106613766,LOC107552698 coding upstream 7276 10906357 ~ 10912672 (+)
AMCG00005826 sirt6,LOC107667852 coding upstream 33701 10882619 ~ 10886247 (+)
AMCG00005833 NA coding upstream 73090 10845536 ~ 10846858 (+)
AMCG00005836 aes,chico,LOC103379965,LOC106574496,LOC107558286 coding upstream 207389 10701010 ~ 10712559 (+)
AMCG00005837 NA coding upstream 222947 10696777 ~ 10697001 (+)
AMCG00005869 unc13a coding downstream 6247 10929794 ~ 10962687 (+)
AMCG00005813 NA coding downstream 169284 11092831 ~ 11097368 (+)
AMCG00005812 NA coding downstream 174862 11098409 ~ 11103223 (+)
AMCG00005815 LOC105011560,LOC106515027,LOC106613776,LOC103149819,LOC103463645 coding downstream 216251 11139798 ~ 11140832 (+)
AMCG00005816 LOC106613776,LOC100708007,LOC103354199,LOC102796955 coding downstream 247467 11171014 ~ 11172074 (+)
G154583 NA non-coding upstream 251687 10667998 ~ 10668261 (+)
G154574 NA non-coding upstream 343511 10575979 ~ 10576437 (+)
G154505 NA non-coding upstream 393896 10523967 ~ 10526052 (+)
G154473 NA non-coding upstream 430094 10419906 ~ 10489854 (+)
G154451 NA non-coding upstream 616451 10302957 ~ 10303497 (+)
G154722 NA non-coding downstream 74102 10997649 ~ 10999389 (+)
G154775 NA non-coding downstream 250848 11174395 ~ 11180237 (+)
G154815 dot1l non-coding downstream 438458 11362005 ~ 11362233 (+)
G154816 NA non-coding downstream 446877 11370424 ~ 11370912 (+)
G154831 NA non-coding downstream 455233 11378780 ~ 11379289 (+)
G154636 LOC108435919,LOC108271001 other upstream 4219 10913397 ~ 10915729 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other upstream 183322 10721752 ~ 10736626 (+)
AMCG00005835 LOC107586405 other upstream 205241 10679937 ~ 10714707 (+)
G154499 NA other upstream 403558 10512504 ~ 10516390 (+)
G154486 NA other upstream 448317 10470543 ~ 10471631 (+)
AMCG00005840 LOC100304646,LOC107384145 other downstream 83251 11006798 ~ 11010354 (+)
G154756 NA other downstream 159614 11083161 ~ 11086011 (+)
G154798 NA other downstream 396417 11319964 ~ 11361770 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other downstream 482759 11406306 ~ 11409672 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other downstream 678355 11601902 ~ 11610151 (+)

Expression


Co-expression Network