AMCG00005869 (unc13a)


Basic Information

Item Value
gene id AMCG00005869
gene name unc13a
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 10929794 ~ 10962687 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005869
ATGGATTCCCCCTCCACTCTGGATCTTACCGGGCCCGTCTCCACTGTGTGCCAGTCTGCCGCCCTCCTGCCTCTCCACTATAGCTCTACAGCTCCCAGCTGCTCCAAGATAACCATGAAGAAAGCCAAGCTGGATGGAGCCCAAGAGAAATTCAACACCTATGTGACCCTGAAGGTCCAGAATGTGAAGAGCACCACCATCGCAGTGAGCGGGAGCCACCCCTGCTGGGAACAGGACTTCATGTTTGAGATCAATCGGCTGGACCTGGGGCTGACGGTGGAGGTGTGGAATAAAGGACTGATCTGGGACACCATGGTTGGCACAGTGTGGATCCCTCTGCGCAGCATCCGACAGTCCAATGAGGAAGGCCCCGGGGAATGGTTGACCCTCGACTCGCAGGAGGAGGCACGCTATTGGGCCAAAAAACTGGAGCAGCTGAATGCCATGAGAGACCAGGATtaCACCTAccaggaggagcaggagagacCGCTACCTGTCCCAGGCACACAATGCTGTAACTGGAGTCTATGGGGAGACCAGCAGAACGATGACCCTGACAGCGCGGTGGACGATAGGGACAGTGACTACCGCAGCGAGACCAGCAACAGCATCCCGCCGCCCTACTACACCACCTCGCAGCCCAACGCCTCGGTGCACCAGTACCCCATGCGGCCCCCGCACCAGGGCTCGCACGACTCCTACACAGACTCCATGCAGAGCTGCGACCTGGATTACGCCGACCACCGCCGGGCCATGAGACACTATGATAGTTTAGACTCTGCCACCAACGGGCGCAGCGACCTCGAGTCCGTCTCGGGTTCGAGCCGCCTGACCAGCCGCCAGTACTCCCTAGACAGTAGGCACTCCCTCTCTGATAGTCCCACAGGCAGCAGCCGCTACGCGTCATCCGGGGAGCTGAGCCAGGGCAGCTCCCAGTTGAGCGAGGAGTTCGGCCCTGAGGACGGCGAGAGCCTGCGGGGGTCCGAGCTGTACGACGACCCCGAGGACTCCTACCACTCCTGCCACAGCTCCGTCAGCTATGGCAAGGACTCGCCCGACTGGGACCCTGATGAGCCGGTGGAGGGTTACAGCGACGAGGGCGGGTACCCCAAGGACGGCGGGGAGGAGGGCGCGCTGTATGACGAGCTGGAGGAGGGGCCCGGGGAACTGTACGAGCCGGAGGGGGAGCTGTACGAGGACGAGGAGCTGTACGAGGAGGACGATGACCTGTACCCACCCGAGGCCCAGCTGGAGGAGGGCGAGGAGTCGTCGTACACCCCCACGCCGGGCGACACCCCCCTGTCCCCGCCCTCCGTCCCCGAGGCCCCTCTCCCCGCCGGCCGCCCCCCACTGGAAAAACAGCCCTCCCTGCACCAGACACAGACCCAGATTCAGACACCCGCCATCCTCACCCCTGTCCAGCCCCCTGCCCCCACCGCCCTCCAGTCCCAAGCCTCCATCGAAGTGCCCCCTGCCAAAGAGGAGCCCCCCGTGCTGCCGACCCCCGCCATGCCCACCCCGGAGCGGACAGAGCCCCTGGAAGACAGttaCCCCGTAGGCGATGTCTCACAGGACTCCATGACTCGGGCCAAAGCCAACTGGCTGCGTGTCTTCAACAAGGTCCGTGTGCAGCTACAGGAGGCTCGAGGAGAGAGTGGAGGTGGCCAGTCTCTGTGGTTTAAAGGCGGGCCAGGAGGGGCGCTGTATAGCATAGACAGCATGCCGGATCTCCGAAAGAGAAAGGCCATCCCTCTAGTTAGAGACTTGGTGTGGACGGCCACCACGCCCACCTACTGCTACGAGTGTGAGGGGCTGCTGTGGGGCATCGCGCGCCAGGGCATGCGCTGCACGGAGTGCGGGGTGAAGTGCCACGAGAAGTGCCAAGACCTGCTCAACGCCGACTGCCTGCAGAGTGAGGGAgcccgtcccAACATCATCATGGTTCTGAAGGACCGCATGAAGATCCGGGAGCGGAACAAGCCGGAGATCTTCGAGCTGATCCAGGAGGTATTCGCTGTGGCCAAGGCCTCCCATGCCCAGCAGATGAAGCAGATCAAGCAGAGCGTCCTGGACGGCACCTCCAAATGGTCAGCCAAGATCAGCATCACCGTGGTATGTGCCCAGGGTCTCCAGGCCAAGGATAAGACGGGCTCCAGCGACCCCTACGTCACCGTGCAGGTGGGCAAGACCAAGAAGAGGACAAAGACCATCTACGGCAACCTCAACCCAGTGTGGGAGGAGAACTTCCACTTCGAGTGCCACAACTCCTCGGACCGGATCAAGGTGCGAGTGTGGGACGAGGACGACGACATCAAGTCCCGTGTAAAGCAGAGGTTCAAGAGGGAGTCCGACGACTTCCTGGGACAGACCATCATCGAGGTCCGCACGCTGAGCGGGGAGATGGACGTGTGGTACAACCTGGACAAGCGCACAGATAAGTCGGCGGTGTCGGGGGCGATCCGGCTGCACATCAGTGTGGAGATCAAAGGAGAGGAGAAGGTGGCCCCCTACCATGTGCAGTACACCTGCCTGCACGAGAACCTGTTCCACTACGTGACCGACGTGCAGAACACGGGGGTGGTGAAGATCCCGGACGCCAAGGGGGACGACGCGTGGAAGGTGTACTTCGAGGAGACGGCCCAGGAGATCTACATGTGCCCGGGCGTCCCCGCTGTGATGAGCACGCTGCTCGCCAACATCAACGCCTACTACGCCCACACCACCGCCTCCACCAACGTCTCCGCCTCCGACCGCTTCTCCGCCTCCAACTTCGGGAAAGAGAGGTTTGTGAAGCTCCTGGACCAGCTACACAACTCCCTGAGGATTGACCTCTCCATGTACAGGAATAACTTCCCAGCCAGCAGCCCAGAGCGGCTACAGGATCTGAAGTCCACAGTGGATCTGCTGACCAGCATCACTTTCTTCAGAATGAAGgTCCAGGAGCTGCAGAGCCCCCCCCGGGCAAGCCAGGTAGTGAAGGACTGTGGCCCCAGCATCAAGAACCTGGACTTCTGGTCCAAACTCATCACTCTGATCGTGTCCATCATTGAGGAGGACAAGAACTCGTACACACCCTGCCTCAACCAGTTCCCCCAGGAGCTGAACGTGGGGAAGATAAGTGCGGAGGTCATGTGGAACCTGTTTGCTCAGGACATGAAGTATGCCATGGAGGAGCACGACAAGAACCGGCTGTGTAAGAGCGCGGACTACATGAACCTGCACTTCAAGGTCAAGTGGCTCTACAACGAGTACGTCAAGGACCTGCCCTTCTTCAAGAGCCGCGTGCCCGAGTACCCCGCGTGGTTCGAGCCGTTCGTGATCCAGTGGCTGGATGAGAACGAGGAAGTGTCTCGAGACTTCCTGCACGGGGCGCTGGAGAGAGACAAGAAGGATGGGTTCCAACAAACCTCGGAGCATGCGCTGTTCTCCTGCTCGGTGGTGGACGTCTTTTCCCAGCTGAACCAGAGCTTCGAGATCATCAAGAAGCTGGAGTGTCCTGACCCCCAGATTGTTGGCCACTACATGAGGCGATTTGCAAAGGTTATTCttattgttttaactgtgtttCTGTTATTACTGTTGTTCCAGCCGCATATCGAGGAGTGTGTGAAGCAGATGGGCGATATCCTGAGTCAGGTGAAGGGCACCGGCAATGTGCCCGCCAGCGCCTGCAGCAGCGTGGCCCAGGACGCCGACAATGTGCTGCAGCCCATCATGGACTTCCTGGACAGCAACCTGACTCTGTTTGCCAAGATCTGTGAGAAGACGGTGCTGAAGCGGGTGCTGAAGGAGCTGTGGAAGCTGGGCAGGGTGAAGCTCGCTTGTCACAGCGATGGGACTCAGCTGATTTTCAATGCAGCCAAGGAGCTCGGCCAGCTCTCTAAACTCAAGCAATACTTCCACGCAGGGGGGGTGGGGCTGAAGAAGACCTTCCTGGAGAAGAGCCCTGACCTGCAGTCTCTGCGATACGCCCTCTCCCTGTACACACAGGCCACTGACACCCTCATCAAGACATTTGTGCAGACCCAGAATGCACAGGTTCACGGAGGGAAGGGGGTGCGGTACACCCTTAGCGAGGAAGTCGACCGCAAGAGGAAGTTCGCCACCAAGTCCAAGAACAACAGCTGGGCGCCCAAATACAACGAGACTTTCCCcttCACGCTGAGCAGCGAGGCGGGGCCGGAGTGCTACGAgctgcaggtgtgtgtgaagGACTACTGCTTTGCACGGGAGGACCGCACGGTGGGGCTGGCTGTGCTGCAGCTGCGGGACCTGGCCTCCAGGGGCAGCGTGGCCTGCTGGCTCCCCCTGGGCCGCCGCATCCACATGGACGAGACGGGGCTGACGGTGCTGCGCATCCTGTCCCAGCGCAACAATGACGAGGTTGCCAAGGAGTTCGTCAAGCTCAAGTCTGACACGCGCTCTGCAGAGGAGGGCAGCTAG

Function

symbol description
unc13a Predicted to enable calcium ion binding activity; diacylglycerol binding activity; and phospholipid binding activity. Predicted to act upstream of or within chemical synaptic transmission; intracellular signal transduction; and synaptic vesicle maturation.

NR:

description
PREDICTED: protein unc-13 homolog A isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005869 True 4443 mRNA 0.60 37 10929794 10962687

Neighbor

gene id symbol gene type direction distance location
AMCG00005868 NA coding upstream 6247 10919948 ~ 10923547 (+)
AMCG00005867 eef2b,ef2,LOC106613766,LOC107552698 coding upstream 17122 10906357 ~ 10912672 (+)
AMCG00005826 sirt6,LOC107667852 coding upstream 43547 10882619 ~ 10886247 (+)
AMCG00005833 NA coding upstream 82936 10845536 ~ 10846858 (+)
AMCG00005836 aes,chico,LOC103379965,LOC106574496,LOC107558286 coding upstream 217235 10701010 ~ 10712559 (+)
AMCG00005813 NA coding downstream 130144 11092831 ~ 11097368 (+)
AMCG00005812 NA coding downstream 135722 11098409 ~ 11103223 (+)
AMCG00005815 LOC105011560,LOC106515027,LOC106613776,LOC103149819,LOC103463645 coding downstream 177111 11139798 ~ 11140832 (+)
AMCG00005816 LOC106613776,LOC100708007,LOC103354199,LOC102796955 coding downstream 208327 11171014 ~ 11172074 (+)
AMCG00005854 LOC108270825,LOC105011562,LOC103046807,LOC108438768,LOC102210929,LOC108247476,LOC101470054,LOC105929969 coding downstream 242700 11205387 ~ 11206589 (+)
G154583 NA non-coding upstream 261533 10667998 ~ 10668261 (+)
G154574 NA non-coding upstream 353357 10575979 ~ 10576437 (+)
G154505 NA non-coding upstream 403742 10523967 ~ 10526052 (+)
G154473 NA non-coding upstream 439940 10419906 ~ 10489854 (+)
G154451 NA non-coding upstream 626297 10302957 ~ 10303497 (+)
G154722 NA non-coding downstream 34962 10997649 ~ 10999389 (+)
G154775 NA non-coding downstream 211708 11174395 ~ 11180237 (+)
G154815 dot1l non-coding downstream 399318 11362005 ~ 11362233 (+)
G154816 NA non-coding downstream 407737 11370424 ~ 11370912 (+)
G154831 NA non-coding downstream 416093 11378780 ~ 11379289 (+)
G154636 LOC108435919,LOC108271001 other upstream 14065 10913397 ~ 10915729 (+)
AMCG00005834 LOC108271164,LOC108430094,LOC107393192,LOC107719559,LOC107699414 other upstream 193168 10721752 ~ 10736626 (+)
AMCG00005835 LOC107586405 other upstream 215087 10679937 ~ 10714707 (+)
G154499 NA other upstream 413404 10512504 ~ 10516390 (+)
G154486 NA other upstream 458163 10470543 ~ 10471631 (+)
AMCG00005840 LOC100304646,LOC107384145 other downstream 44111 11006798 ~ 11010354 (+)
G154756 NA other downstream 120474 11083161 ~ 11086011 (+)
G154798 NA other downstream 357277 11319964 ~ 11361770 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other downstream 443619 11406306 ~ 11409672 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other downstream 639215 11601902 ~ 11610151 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location