AMCG00005922


Basic Information

Item Value
gene id AMCG00005922
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12561697 ~ 12605848 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00005922
AGCCAGACCGCAGCGCAACTCTTTCTGATTCCCATGGCGGACTCCCCTCTGAACAACTCCTGGCCTTCCTTTTCCAAGCTCTGGATGAAACGATGGTCCTTCAAAAGAGACACAGATTTCGAGGAACCCACACTGGACGCCGACGGCAGCATCGAGGACATCCTGTCCCTAGACCCCTCCCTGCGTGGGACAGAGTATTTCAAAGACCTGGAGCTGCCCGTGCCGAGGGAGAGCGCCCCCCTGAAGGACCACCTGTGCCCCAGCGGCCTGCAGCTCCAGCCTGGACCCTACTTTCAACACGTGGCCGACAGCAATTCCTGCCCCAGCTACCTGTCTTACCAGGAGACCATGGCCAGCCAGTTGGACACCTCAGTCATGGCGGCCCAGAACTGTGACAGGGACACTACCGCCCACAGTGAAACGGCCACAGACGACACGACTCTGTATTTGGAAGACAACGACATAGAATCGGGGTCTTTATACACTCTAGTACGCTCCATGTCCACATCAAGAAGACACAGCTGGGAGCCCCCTTTGTCCCCAGTGGACTTGGGGAGGAGGCTGAGTCTAGACACCCCGTCCAGGGACAGCGATGGAGAGCAGGGGGAAGACAGCCCCACTCACACCTCACAGGAAAAGGCCTTTGAGAAGGATGAAGCTGCCAAGAGACTGCGCTCCAAGTCTGTGGTGCTGACGACCGAGAGGGTCAGCACGGCTCGCATATCACGCAGCTGGGAAACATCTTTGCCCATGCAAGGAGATGGACAGGACATGGAAGATAATACACAGACCCAGGAACAGCAAAGCCGCATGGCCAAGCAACGGTCGGCCCGCTCGGAGACCAAGCAGTCTTCGGGAAATGTGACCTGGTACGAGTTTCTCTCTAACGAAAATGAGGATGAGGAAGACCGGACTGAAAAAGTGGAGCGGGGCACGAAAGTGAAGCGGAGGCTGAGTTCCCTGAAGAACAGAGGTAAGAATCgcgagaaagagaaagagagagacagagagagggagaaggagagggagaaagagaaagagagggagaaggaacCCAAGGAGAAGGGGCGCATGCGGAACGGGCACCAGTTTGTGACGGGCACTTTCTCCAGCTGGGCCACATGCACGCTCTGCAGCAAGACACTGCTGACAAGGAATAgcctgcagtgtctcaACTGTGCCGTGAACGTCCACAAGAGCTGCAAGAACCTGCTCGCCGAGTGCACGAGCAACAGGAACAAGGTTAAAGACTCCAGGAGCAGCGGCTCTGTCCAGAACACCGTGCAGTACTTCAATCAAGGTGAGTGGGCCCTGCAGCGCTGCCTTCTGCTGTGTCTCGCTTGTGCGTTTCATTACTGCGGCCGCTGGAGCTGCTTGGTCACCATGGAGAAGCAGCTGGCTCTTGATACGGGGAAAGCGCACCGGGGCCAACGCGGCGACGCCCTGCCCGCCCGCCCCAGGCTGCCCCTCTTGAGGGCGTTCTCTCAGAGGTACGGCATGAGGATGCTGGTGCAGAAGGAGCTGCTGACCTGCCGGGTGCTGAGGTCCCTGCAGAGGCCCAGGGTGCAAGGACTGGGCGCGGCCTGGGTGCAACGCTGCTCTAACACCATGCTCATGTCTGCAGTAGGTGCCTCCACCAGAGACCTGCCCCGCTCTGCCCTCGCGGCCCCCGATGGCTCCTCTGGCTCCCCCCGCGGCCCAGGTATGACCATCACGCACCGCGGGAACAGCTCTCTGCCCATCGCCAGCACCACCGCCAGCCACAGCAACAGCTCCGGATCAACCTCGGCAGAGATGGACGAGCCAGATGCAATAAACAACAGGAACAAGCTGCAGTCAGATGATGCCGTTTCTCTGGCCCCTTCCACTACAGAGTCCATCATTGTAGAAGATGCACATTTTGCTGCTTTACGGGGAGATTTGGAAACGGACGCCCAGGACTTTGAACCCGAGTCCTGGAGCCTGGCTGTGGACCCGCTGTACTCCAAGCAAAACAAGGATGCAGTCAAGAGGCAGGATGTGATCTATGAACTGATCCAGACGGAGATCCACCACGTGCGCACTCTGAAGATCATGCTGCGGGTGTACTTGAGGGAGATGCGTGAGACCCTGCAGATAGATGAGCCCAAGCTGGAGCGGATTTTCCCCAGCGTGGAGAACCTCTTGGAAATCCACCAGCAGTTCCTGGCCCGGCTGaaagagagacggagagaatCCCTGCAGCCTGGCAGCGACCACAACTACTGCATCCAGAGGATCGCCGACGTCCTGAGCACAGAGTTTTCCGGAGACTTGGGCGAGCGGATGAAGGACAGCTATGGGGAATTCTGCAGTCATCACAGTGAAGCGGTCAGCTATTACAAAGAGCTGCTGCAGAACAATAAGAAGTTCCAGAACCTGATTCGGAAAATCAGTAACCTCTCTATCGTACGAAGACTAGGCATCCCAGAATGCATCTTGTTGGTAACTCAGCGCATCACAAAGTATCCTGTCCTGGTGGAACGGATTCTGCACAATACAGAAGCCGGCACGGAAGAGCACGAGGAACTGACCCGGGCGCTCGGCCTCATCAAAGACACCATCACACAAGTGGACGCGCAGGTGAACGAGTACGAGAAGATGATGAGGCTGAAGGATGTGGCCAGCAAGATGGAGCCTAAGTCCTGTGGGAAGTTCAAGGACAACCGCGTGTTCCGCAGGGAGGACATCGTGCAGGGCCGGCGGAGACTCCTTCACGAGGGGGTCGTGAATTGGAGGGCGGCTTCCGGGCGGCTGAAAGataTTTTTGCCCTGCTCCTGACAGATGTGCTTTTGTTATTTCAAGAAAAGGACCACAAATATGTCTTTGCATCTGTGACGCTGTTTGATCGACAGGACAACAAGCCGCCGGTCATTTCCTTGCAAAAGCTAATCGTGCGAGAAGTGGCCCATGAGGATAAAGGCATGTTCCTCATCTGCGCGTCGTCCAAGGAGCCTGAGATGTACGAGATCCACACCTCCTCCAAGGAAGAACGCAACACCTGGATGACCGTCATACGTCAGGCTGTGGAGAACTGCCCAGATGTGCAGGAAGGGCTTTTCAGTGACCAGGAAGAAGCCCGAATTCAGAAACTGAGAGAGCTTCAAGAGCGCCTCAGTCAGAAGGACAGCCAGATCGTGAACAGCCTGACGGAGAAGCTGCAGATCTTTGGGGAGATCACCGAAATGATGACGGGGTTCGAGGAGACCAGTCAGGGGTCGTGCTCCCGCCTCCTGCTGAGAGGGGACGGCTCGGACCTACAGCAGGGGGAGCAGCTTCTCAAGGGGGCCATCACTGACGTGGAGAATCTGCAGAACCTCTTGCTCTCGGGAGTCAAGGAGCCTTCCCAGCCCCCAGAGGACAACCAGGGCTCCACCGTGCTGCCGCGGCGTGCGGACACCTTCGGAGGATATGACAGCAGTCCCACCATCCTCAATAAGAGTAAGGCGAAGGCTGAGCTATCACGAGaacctccccctcctctcacCCTCATAGACGGCAGCATCAAGAAGAAGACCTACAGTGGCAGCGAGAGGCCCCGGGAGAGGAGCCAGAGGGCCAGCTCGGACCCCCAGCTGAAGGAGATCAGCAGCAGAGAGAGCCTGGAGCAGCCGGTAAGGAGTAGCGGCCTGGTCACATCTGAGCCACAGGGTTCATCACGCAGCGACAGGCTTTGCCACCAGTCCCGCCACCAGTCCCTCCCCCAGTTGTGCCGCCACTTGCAGAGTTACTGTGATGGAGCAGTGCCATTCACAGATgtGGACGAAACTCCGGCAACTAGCTGGAACACCATCTGGGGCACAGCCTTCCCCGAAGCAGAGGCCGTCATCTGCCACCAGGACAGCTACATCGAGCTGATGCGGGCCAACGTACCGGACCGGGACAAGCTGGGCCGTTTCCGGGGCAACGTGCTACTGGAGCAGGAGAAGCAGCGCAACTTCGAGAAGCAGCGCGAGGAGATGGCCAACTTCCACAAGCTGCAGAGCCAGCTGCGGCAGGAGCAGCAGCGGCTCGAGCGTGAACGCGAGCGCCACCGGCAgcaggtggaggtggaggaggaccGGCTGCGCGAGCGCGAGGAGGAGTGCCAGCGCCTGCGGGCCCGGCTGGACCAGGAGCACGAGGAGCTGGAGAACCAGCGTGAGAAGTACCAGCAGGACCTGGAGAGGCTGCGCGAGTCCACGCGGGCCGTGGAGAAGGAGCGCGAGCGCCTGGAGCAGCAGAAGCGCTTCAAGAGGCACAAGCCGGGCGCGGTCAAAGCGGACGCCCCGCAGGGTCTCACCCACTCCACCAGCTTCAATGGGGAGGGCCTGCTGGCCGGTGGGGCGGAGCTGTCCCTGCCCACCAAGCACCGCTCCAGCCTGACCATGGCCGGCCCCGACTACCCGGAGCGGGCTGAGACACTGCTGCGGCGAGAGAGCACCTCGCTGCCCGTCAAGATCGAGGTGCCCATCCACCTGATCAGCACCACCAACCAGCTGCACAAACAGACGGGTAAAGAAGATGGGACTTCGAAAGGAAAGTGGTCCCTCAGCCCCACCCAAAACTACCAACAAGAATCGACAAGTCCTCCGGACTCTTCCTCCGACACCCTGACTGTCTACCCGGCCAGCATCCCCAAACGCAACAGCCAGAGCTCTCTTCAAACGCAGGCCCCACCCCCCTACACCATCACAGAGGAGGTCAGCAAGGAGGACGTCATCTTCTTCTGA

Function

GO: NA

KEGG:

id description
K21066 ARHGEF18; A-kinase anchor protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00005922 True 4731 mRNA 0.59 28 12561697 12605848

Neighbor

gene id symbol gene type direction distance location
AMCG00005920 NA coding upstream 16840 12521871 ~ 12544857 (+)
AMCG00005921 LOC108415638,LOC106916182 coding upstream 68124 12491641 ~ 12493573 (+)
AMCG00005915 use1 coding upstream 117810 12438288 ~ 12443887 (+)
AMCG00005956 LOC107718480 coding upstream 291934 12256605 ~ 12269763 (+)
AMCG00005957 cope,LOC106613672 coding upstream 305894 12251032 ~ 12255803 (+)
AMCG00005985 lsm7,LOC107593053 coding downstream 130279 12736127 ~ 12738524 (+)
AMCG00005986 NA coding downstream 133623 12739471 ~ 12741891 (+)
AMCG00006062 fbn3,fbn2b,LOC106613712,LOC106573567,LOC108441289 coding downstream 179453 12785301 ~ 12839664 (+)
AMCG00005965 NA coding downstream 364026 12969874 ~ 12995480 (+)
AMCG00005963 NA coding downstream 389736 12995584 ~ 13020294 (+)
G155182 NA non-coding upstream 114013 12447480 ~ 12447684 (+)
G155017 NA non-coding upstream 353743 11970824 ~ 12207954 (+)
G155053 NA non-coding upstream 358225 12201736 ~ 12203472 (+)
G155018 fstl3 non-coding upstream 574773 11984663 ~ 11986924 (+)
G154979 zmp:0000000521,LOC107696078,LOC107596226,LOC105888700 non-coding upstream 649597 11906641 ~ 11912100 (+)
G155304 NA non-coding downstream 285238 12891086 ~ 12891396 (+)
G155310 NA non-coding downstream 302846 12908694 ~ 12910931 (+)
G155297 NA non-coding downstream 314252 12920100 ~ 12937119 (+)
G155313 NA non-coding downstream 325468 12931316 ~ 12931875 (+)
G155350 NA non-coding downstream 416486 13022334 ~ 13023036 (+)
AMCG00005895 NA other upstream 655610 11903352 ~ 11906087 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other upstream 951546 11601902 ~ 11610151 (+)
AMCG00005907 LOC105011584,LOC103026129,LOC106584418,LOC104949087,LOC106613791 other upstream 1152025 11406306 ~ 11409672 (+)
G154798 NA other upstream 1199927 11319964 ~ 11361770 (+)
G154756 NA other upstream 1475686 11083161 ~ 11086011 (+)
AMCG00005987 NA other downstream 85968 12691816 ~ 12709543 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other downstream 105930 12711778 ~ 12714571 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other downstream 288272 12894120 ~ 12895452 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other downstream 419916 13025764 ~ 13033408 (+)
G155637 eps15l1,LOC107592720 other downstream 1491956 14097804 ~ 14098696 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_07673227_07694020 ARHGEF18, ARHGEF18B coding CI01000030 null 7673227 ~ 7694020 (+)