G155310


Basic Information

Item Value
gene id G155310
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 12908694 ~ 12910931 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU195630
ttGTACGTAGGTTTGGCAACGTATTTATCCACCATACATATTAACCATGCACAAATTAAGTGAcgcatatatatttacatagtgGATTGCACttaacagaaatacagaaacaatcaCTGATAAAGGGagtgaatgagagagaaagcacgctttaaaaaaaaggaaataaaagataaaatcgCTCACTTTCCAGTGTTATAGATGCACATTTCAAATCTAAATCTTTAAACTCAGGCTTATAAATCAGCTAGTatcacaatttagttttttccgtAGTAGTAGGAGGTCAAGGGAAAGTAAAAGGCAGCTAATTGTGAAGACGGAGTTCTCTGGATGCCAGGTATACTTCTTATAGGAAACAGGTAGATgcaaaaaagcagaacaaaaataaaataaaaaataaacattcaagaTTGCATTTGATAGAGTGCTCTGTACTGAATTCCTCACAAGGCTGGAATCAGAATTAGTTTCTAGTCTAGACGTTCTCAGGATAGGGTGTAATGTCATACGTCTCAAAAGGTTTCACTTTTAATTACTTGAATGACCCATACGGTTTCTTAAGACATTTTGTGTTGCACTTAAAACTCCTCCGTCAAACGCACAACATTCCCAGAATTATACATCCACCTCTTCCGATTCTgaagttcatttaaaaaaaaaaaaacgattagaacagaacaaaaatgcaCGCATGACTTTTCCCAAGGCGGTATCCGAAAGACCTTGGTTTCTGTTAAGGTTCTGCAAAAGCCGCGGCGCGTCAATCAAGCCCAAATTTAGATCCTCGATGACCAGTTTAGAGAATGCGTGTGTTTCGGTTTAAAAGGCTGGAAGTCATCTGCAGAGTGAGGTTATATACATTAAATGGTAGATATTGCTTCTATATTAAATCTCTAATGTGCCTAAGATTATACTTTACAAGGAAGAAAAGAGCATCGACATGCACAACTTCGCTGGGTCAGCTCTCCAGCCCATAGTCCACCGATCTAAAGCTATCTATAAAGGAGATACAATCGTGCGCTGTGAACCCTAACTTCTTAATGCAAGTGGTAGCAGGGCATGAAATGATGCACTATAATTATTCAAAAGTTTCAGAAAGAACAAAGTACAGCATTAAAACATCTGGGCGAACTCACTGCTGATCCTCTGTACCAGTTTTACGTTTAGGGGTTTGGAAGACAttaccaccccccctccccagggACAGCGTATAGTGTCGTAGTGTCAAGATGGGTGCTAACATAATTAAAGTACTTAAGCTCTTATCACCCCCAACTAGGTATTTCACTGCCCCCACCCACCCATCGTCCTCTTGGGGTGGTCAGTATCAACCCAGTTATTGAACGCTCTCAAATATCCACTGTAGGctttacatttggaaatacttTTCTAATCTTAAAATATCAGATGCAGTGCGTTCAGGTATAGAATTCACTTTATTTAGagattggttttattattttatttatttaagagatGGGCAGAACACAAGCAGCCACAAAAGGCagacaacacccccccccccccaacccccaacccACCCCCATTAAAAACGTCCCTCTGGTGCACTGGCTTTAGGACAGTGAATGTGAGCAGAGGATATTTCGGACTACTGGTACCAGCAGCACAAGTGAATTTGGAACGGTCCCATCTTAGGAAAGTACTGCTCCAACAGCTCGTTTCCCCCAGATTACAGATTGATAAACTCGACTCTCGTATTCGTTTCGGTACCTCCGCCAAACCTGCAAGGAAGGCGATCCGTTTGCCGGCTGCTTCCGAGACCGTCCTGAACGAGTCACTGGGCGGAAAGGCTGCCTACCGAACGTGCTCATTTCACGCCCCGCTCCGGACAGGGCACTCCGGGAGCCGGCTGAGGCAGACGGCTGCCCCCCAGACTGATCCCTCGCCATCCCTTCGACAGGAGTGGGTCACATGATCAGTGCTGAATTTCCCAGCGCTGAAGAAATCTCGTCACAGTAAATGAGGGGAAATTCAGAGGCTCGACAAGAAATTGTAATAGAATAAATGAAAAGAgggcgaaaaaaaaaaaaaaaaaagtgatgacGGGAAGGAATGTTAGCGTTAAAGTTACAGCTTTCAGAGACGAGGGAGAAATTCCACAGAAATCACAGGGAATACGGGACAGCAGCTGCACAACACTCGGGGGCAAAGCAGAGATGaggggtgagggagaggggcgggggggggggNN

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU195630 True 2215 lncRNA 0.43 2 12908694 12910931

Neighbor

gene id symbol gene type direction distance location
AMCG00006062 fbn3,fbn2b,LOC106613712,LOC106573567,LOC108441289 coding upstream 69030 12785301 ~ 12839664 (+)
AMCG00005986 NA coding upstream 166803 12739471 ~ 12741891 (+)
AMCG00005985 lsm7,LOC107593053 coding upstream 170170 12736127 ~ 12738524 (+)
AMCG00005922 NA coding upstream 302846 12561697 ~ 12605848 (+)
AMCG00005920 NA coding upstream 363837 12521871 ~ 12544857 (+)
AMCG00005965 NA coding downstream 58943 12969874 ~ 12995480 (+)
AMCG00005963 NA coding downstream 84653 12995584 ~ 13020294 (+)
AMCG00005925 NA coding downstream 186138 13097069 ~ 13107823 (+)
AMCG00005926 hapln4 coding downstream 199913 13110844 ~ 13117181 (+)
AMCG00005942 NA coding downstream 327391 13238322 ~ 13240049 (+)
G155304 NA non-coding upstream 17298 12891086 ~ 12891396 (+)
G155206 NA non-coding upstream 277323 12553425 ~ 12631371 (+)
G155207 NA non-coding upstream 323286 12545222 ~ 12585408 (+)
G155182 NA non-coding upstream 461010 12447480 ~ 12447684 (+)
G155053 NA non-coding upstream 705222 12201736 ~ 12203472 (+)
G155297 NA non-coding downstream 9169 12920100 ~ 12937119 (+)
G155313 NA non-coding downstream 20385 12931316 ~ 12931875 (+)
G155350 NA non-coding downstream 111403 13022334 ~ 13023036 (+)
G155351 NA non-coding downstream 113689 13024620 ~ 13025468 (+)
G155353 NA non-coding downstream 123156 13034087 ~ 13036360 (+)
AMCG00005935 LOC105903927,LOC107660390,LOC105900968,LOC108427173,LOC107596281,LOC102310619 other upstream 13242 12894120 ~ 12895452 (+)
AMCG00005984 timm13,LOC106573564,LOC107731338,LOC107587003,LOC106613710,LOC107593051 other upstream 194123 12711778 ~ 12714571 (+)
AMCG00005987 NA other upstream 199151 12691816 ~ 12709543 (+)
AMCG00005895 NA other upstream 1002607 11903352 ~ 11906087 (+)
AMCG00005886 ssbp4,LOC107588873,LOC107690032,LOC107721784,LOC107676978,LOC107729707 other upstream 1298543 11601902 ~ 11610151 (+)
AMCG00005964 gpx4b,gpx4,LOC107723219,LOC107660382 other downstream 114833 13025764 ~ 13033408 (+)
G155637 eps15l1,LOC107592720 other downstream 1186873 14097804 ~ 14098696 (+)
G155638 NA other downstream 1197242 14108173 ~ 14109870 (+)
AMCG00006009 tax1bp3,LOC106573550,LOC107685157,LOC106613700 other downstream 1465064 14375995 ~ 14383580 (+)
AMCG00006022 NA other downstream 1509451 14420382 ~ 14424746 (+)

Expression


Co-expression Network