AMCG00006121 (nfic,LOC106613851)


Basic Information

Item Value
gene id AMCG00006121
gene name nfic,LOC106613851
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 17187308 ~ 17225885 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006121
ATGGATGCCCCCGAATTTCAGGAAAGCTTTGTGACTTCAGGAGTTTTTAATGTAACAGAATTGGTGCAAGTCTCCAGAACTCCGGTGGTGACGGGCACCGGCCCCAACTTCTCCCTGGGGGAGCTGCAGGGGCACCTGGCCTACGATCTGAACCCCTCTGGAGCTGGCATGAGGAGGACGCTGCCCAGTACTTCGTCCAGTGGGAGTAAAAGGCACAAATCGGGCTCCATGGAAGATGACATTGACACTAGCCCTAGTGGGGAGTTCTACACCTCGCCCAACTCCCCAGCCAGCAGCAGCCGAAACTGGCAGGAAGAGATTGAAGGGGGTATCTCTCCCACAGTGAAGAAGACAGAGATGGACAAATCTCCATTCAGTAGCCCCTCCCCCCAGGACAGCTCACCACGGCTCACCAGTTTCACCCAGCACCACCGGCCCGTCATCGCAGTGCACAGCGGCATCTCCAGGAGTCCACACCCCTCATCATCTCTGCACTTCCCCACGACCTCCATCCTGCCCCAGACAGCCTCCACCTACTTCCCCCACACGGCCATCCGCTACCCCCCACACCTCGGCACGCAGGACCCCCTCAAGGATCTCGTCTCTCTCGCCTGTGACCCATCCAATCAACAGCCTGGACCGCTGAACGGCAGTGGTCAAGTGAAGGTGCCCAGCCACTACATTTCCTCGCAGATGCTGGCCCCACCGCCTCCCCCTGGCATGTCCCGACTGACGTTACCACCCGACTCCAAATCCGCTACAACTACCACGGATGGAGGAGCCAATTCTCCCACGTCACCCACGTACTCAGCCCCGGGGACGCCCCCTGCCAACCGTTCCTTTGTGGGAATAGGACCTCGGGACCCTGGGAGCCTCTATCAGGCACAGGTAGGTCCTCCACCTTCTCCCTGTCTGTGTGACTTACACTTCACTTACAGGGAAGAGTCAAACATCTGTCAAGATGGGAGCTCTGAATGGGTCACCCTGCAGAAGACAGGCAGTAAGACTAGTTCGAACCCCTTTGTGGGTATAATTTAA

Function

symbol description
nfic Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA replication and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human NFIC (nuclear factor I C).

NR:

description
PREDICTED: nuclear factor 1 C-type

GO: NA

KEGG:

id description
K09170 NFIC; nuclear factor I/C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006121 True 1038 mRNA 0.58 8 17187308 17225885

Neighbor

gene id symbol gene type direction distance location
AMCG00006152 fzr1,fzr1a coding downstream 92660 17083964 ~ 17094648 (-)
AMCG00006153 NA coding downstream 135556 17036827 ~ 17051752 (-)
AMCG00006133 NA coding downstream 158930 17023028 ~ 17028378 (-)
AMCG00006131 NA coding downstream 164714 17022269 ~ 17022594 (-)
AMCG00006132 NA coding downstream 179034 16980545 ~ 17008274 (-)
AMCG00006122 nfic,LOC107585880 coding upstream 47900 17273785 ~ 17281599 (-)
AMCG00006123 NA coding upstream 198953 17424838 ~ 17442831 (-)
AMCG00006124 csnk1g2,LOC106925954,LOC106953035,LOC102231174,LOC104921814,LOC103359437 coding upstream 224688 17450573 ~ 17468843 (-)
AMCG00006137 NA coding upstream 295939 17521824 ~ 17523344 (-)
AMCG00006157 NA coding upstream 318621 17544506 ~ 17558968 (-)
G156378 NA non-coding downstream 264445 16865098 ~ 16922863 (-)
G156344 NA non-coding downstream 511261 16674798 ~ 16676047 (-)
G156228 NA non-coding downstream 1115780 16066669 ~ 16071528 (-)
G156225 NA non-coding downstream 1124236 16062733 ~ 16063072 (-)
G156207 NA non-coding downstream 1187269 15994787 ~ 16000039 (-)
G156668 NA non-coding upstream 906444 18132329 ~ 18137505 (-)
G156670 NA non-coding upstream 912634 18138519 ~ 18144775 (-)
G156696 NA non-coding upstream 1207721 18433606 ~ 18434245 (-)
G156716 NA non-coding upstream 1306177 18532062 ~ 18532447 (-)
G156717 NA non-coding upstream 1307298 18533183 ~ 18538243 (-)
AMCG00006127 NA other downstream 223658 16947997 ~ 16963650 (-)
G156341 NA other downstream 506536 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 665619 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 725143 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 1230218 15954076 ~ 15957090 (-)
G156907 NA other upstream 2049315 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 2223046 19448931 ~ 19463205 (-)
G157059 NA other upstream 3483914 20709799 ~ 20712216 (-)

Expression


Co-expression Network