AMCG00006144 (med16,LOC106613614)


Basic Information

Item Value
gene id AMCG00006144
gene name med16,LOC106613614
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030142.1
NCBI id CM030142.1
chromosome length 21087710
location 16694712 ~ 16703925 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006144
GCCTGGGTTTACGCCTTTAGCTGCACAGTATAAAAGTTGAATTATCGAACATAGTAAACATATGAATTATTAAGTTTtgtagttatttatataaatgttgctATGATATATatcgttttttcttttacaaaatgaaaatacaaatttcataCAGTACAGAGTTTGTGCAATAATTACAGGCATATTCATAGGCTCCGTAGTACAGGGACTTGGGTCCTTCGGTATTCTTTGGTAAACTTCATCGAATTGGGGGGAGAATGTGTAGTGCTACGACAACGAAAGGTTGACAAATTTAAGAGACAGGACCCCATGATTAAAAGATGGATGTCGCCTATGTCTGTGAGTGGGAAAAGAGACCCAGCAGCAACCACTGCCCCTCCATCCCGCTGGTGTGCGCCTGGTCCTGCAGAAACCTGATCGCCTTCACCACCGACCTCAAGaatgaggaagaggagaaagATTTGAGCCATATGATCCACATCATTGACTCAGAGCACCCCTGGGATGTCTACTGTATCAATTCTGGACACACTGAGGTCATTTCCTGCCTTGAATGGGACCAATCTGGCTCCCGTTTGTTGTCAGCGGATGGGGACGGGCAGATTAAGTGCTGGGGGATGACTGAACATCTGGTGAACAGCTGGGAGAGCACGCTGGGCAGTGCAGTAGAGGGTGACCCCATAGTAGCTCTGACCTGGCTTCACAATGGAGTCAAACTGGCACTACATGTTGAGAAGTCGGGCTCCACTAACTTTGGGGAGAAGTTCTCGCGGGTGAAGTTCTCCCCCTCTCTGACGCTGTTTGGAGGGAAGCCCATGGAGGGCTGGATGGCGGTGACAGTGAGCGGGCTGGTGACGGTATCTCTGCTCAAGCCCAACGGCACACTGCTGACGGCCAGCGAGAGCTTATGCCGGCTGCGGGGCCGCGTGGCGCTGGCCGACATCGCCTTTACGGGTGGCGGGAACATCGTGGTGGCAGCCACCGACGGCAGCAGCTCAGCCCCTGTGCAGTTCTACAAGGTGTGCGTGAACGTGGTGAACGAAAAGTGCCGCATCGACACCGAGCTCCTGCCCTCCCTCTTCATGCGCTGCACCACAGACCCGGCCCGCAAGGACAAGTACCCAGCCGTGCTGCTGTGTGCCTCCAGCCAGATGGGCAGCATTGTAGAGTGTTGGTCTCTGCGCAAAGAAGGACTTCCTGTCAATAACATCTTCCAGCACCGCTCTCCTGTGGTGGGAGAGAAGCAGCCGATGATCCTCAAATGGCGTATCCTCTCTGCCACCAATGATCTGGACCGGGTGTCGGCAGTGGCCCTGCCTAAGCTGCCCATCTCAATGTCCAGTACAGACCTGAAGGTGGCCAATGACACCAAGTTCTGCCCAGGCCTTGGACTGGCCCTGGCCTTCCATGATGGCAGTATCCACATCCTGCACCGGATGTCTCTGCAGACCATGGGCGTCTTCTACGGCTCATCTTCTAGCTCCAACCAACGTGTCACTGACGAGCCAGCCATCAAGAGGCAGCGTGCCGGGGGCCCCACCACACACTTCAAGGCCCTGCAGTTCTCCTGCACTTCGCTGGCCCTGGTCGGAGTTGACAACCATGGCAAGTTGCACATGCTGCGTGTGTCCCCCTCCATGGGCCAGATGCTGGACATGAACACCTTGCTGCGCCACCTGCTGTTCCTGCTGGAGTACTGCATGGTCACTGGCTTCGACTGGTGGGACGTACTGCTTCATGTGCAGCCAGGCATGGTCCACAGCCTGGTGGAGAGGCTGCATGAGGAGTACATGAGGCAGAACCAGGCTCTGCAGCAGGTGCTGTCCACGCGCGTGGTGGCCATGAAGGCCTCTCTGTGTAAGCTCTCCTCGGCCACAGCGGCCCGAGCCTGTGACTTCCATGCCAAGCTGCTCCTCATTGCCATCAGCTCCACGCTCAAATCTCTGCTGAGGCCTCACCTCCTCAACACCCCTGACAAGAGCCCTGGGGACCGGCTGGCTGAGATCTGTGCCAAGAACACTGACATAGATATTGACAAGGTGATGATCAACCTGAAGACGGAGGAGTTTGTGCTAGATGCCTCCACTCTGCAGTCCCTCCAGCAGCTCATCCAATGGGTGGGGGACTTTGTGCTTTATCTGCTGGCCAACCTACCCAATCAGGGCTCCATTGTACGTCCAGGGTTTGGCTTCCTGCGGGATGGGCCTTCTCTGGGGATGCTGCGCGAGATGATGGTGGTAATCCGGATCTGGGGCCTGCTGAAGCCCGGCTGCCTGCCCATCTACACCGCCACCTCCGACAACCAGGACAGCATGTCCCTGCTCTTCCGGCTCCTTACCAAGCTCTGGCTCTGCTGTCGCGATGAGAGCCACCCCCAGGAGCCCGATGAGCCCTTGATTGACGAGTGCTGCTTACTGCCGAGCCAGCTGCTGGTGCCCGCAATGGATTGGCTGCCCGTCAATGATGGCATTATCTGCAAGCTGCAGAGCAAGCACCCCCTGCGCCTGCAGTTCGGGAAGCCCTATAGCTTGCCCGGGCTCAATTCAGGCTCACAGGTGGAGATCTTCTCAAGGAGCCCTGGATCCCAGAGGATGGACAACCTGCGCTGTTTGCACATGGGCGTCTGTCCCACTGAAGACAGCAAGGCCTGCACCAGGTGTGGCTGTGTCACCATGCTGCGATCGCCCAACAAGACCACAGCCGTGAAACAGTGGGAGCAGCGCTGGATCAAGAACTGCCTCTGTGGCGGCCTGTGGAGAAGGATTCCCACCACCCTGTCCTGGCTTTGATCCTTGGTATCGTCAGAATTCTAATTGGAGATGCCCAGACCTTACCTACTGGGTACATATAGACACAGGTTCAGACCAACAAGTTATAGGGAAGGATCCTCAATTCTGGGGTTTGAGAGCGCTATACAATACCACAGAATGACAGAATGGACAACCCCCAGTTGGATCCAGGTTTCCATTCCACTTGAAGAAGCAGTGCCCATGTCACACCGTTCCCAGAAACTGTTCACCTCCCCACGTCCTAAAGGTTATCTTCCTCTTCCCAGTCTACCACAGCACTAGAAAATGACAGCATTTCTGTTCTAGGAAGTGAGTGTAAATCAATATGTTTCTGAACTGACCCAGCATGGATTTGCCCCTTGTACCATCatgctgaaattaaacaagGGGGGAAtccttgacattttaaaacattatttaattttggacAAGGTTCCTTCAAACTGCAAACTTTCCCATTAAGTGAAAGCTGTTTAATCTTTGCTTGTCCATGGAAGAAACTCCACTGCAAAGTGAGGTTGCAGATCCCTCACTACATCAAATTCATCACCGCTTCTGTGacacatttttgcttttgtaaataagaaattcacaataatgtctttttttatacaaGCCTCTTTCCAGTAgatgtttcttaaataaaatcatgttgCTTTGAAGAA

Function

symbol description
med16 Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED16 (mediator complex subunit 16).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 16 isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K15159 MED16; mediator of RNA polymerase II transcription subunit 16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006144 True 3454 mRNA 0.53 15 16694712 16703925

Neighbor

gene id symbol gene type direction distance location
AMCG00006147 NA coding downstream 13244 16660952 ~ 16681468 (-)
AMCG00006146 NA coding downstream 33796 16648022 ~ 16660916 (-)
AMCG00006117 NA coding downstream 56746 16627973 ~ 16637966 (-)
AMCG00006120 NA coding downstream 128555 16528222 ~ 16566157 (-)
AMCG00006119 NA coding downstream 194134 16498652 ~ 16500578 (-)
AMCG00006145 NA coding upstream 18285 16722210 ~ 16749395 (-)
AMCG00006129 NA coding upstream 131954 16835879 ~ 16844932 (-)
AMCG00006126 wdr18,LOC106613619 coding upstream 199668 16903593 ~ 16905803 (-)
AMCG00006128 NA coding upstream 218970 16922895 ~ 16941137 (-)
AMCG00006132 NA coding upstream 276620 16980545 ~ 17008274 (-)
G156344 NA non-coding downstream 18665 16674798 ~ 16676047 (-)
G156228 NA non-coding downstream 623184 16066669 ~ 16071528 (-)
G156225 NA non-coding downstream 631640 16062733 ~ 16063072 (-)
G156207 NA non-coding downstream 694673 15994787 ~ 16000039 (-)
G156203 NA non-coding downstream 747185 15947208 ~ 15947527 (-)
G156378 NA non-coding upstream 161173 16865098 ~ 16922863 (-)
G156668 NA non-coding upstream 1428404 18132329 ~ 18137505 (-)
G156670 NA non-coding upstream 1434594 18138519 ~ 18144775 (-)
G156696 NA non-coding upstream 1729681 18433606 ~ 18434245 (-)
G156716 NA non-coding upstream 1828137 18532062 ~ 18532447 (-)
G156341 NA other downstream 13940 16651540 ~ 16680772 (-)
AMCG00006118 NA other downstream 173023 16505364 ~ 16521689 (-)
AMCG00006083 NA other downstream 232547 16454284 ~ 16462165 (-)
G156206 klhl26,LOC107680559,LOC107597147 other downstream 737622 15954076 ~ 15957090 (-)
G156088 rps15,LOC107680474,LOC107685215,LOC107578086 other downstream 1203070 15433432 ~ 15491642 (-)
AMCG00006127 NA other upstream 244072 16947997 ~ 16963650 (-)
G156907 NA other upstream 2571275 19275200 ~ 19293820 (-)
AMCG00006201 LOC105903982,LOC108433090,LOC106600049,LOC105020399,LOC107384124,LOC106569512 other upstream 2745006 19448931 ~ 19463205 (-)
G157059 NA other upstream 4005874 20709799 ~ 20712216 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003345 med16 coding NC_007122.7 CM002895.2 14104417 ~ 14143702 (+)
grasscarp (Ctenopharyngodon idella) CI01000051_07855788_07865402 MED16 coding CI01000051 null 7855240 ~ 7865625 (+)