AMCG00006379


Basic Information

Item Value
gene id AMCG00006379
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3570039 ~ 3621796 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006379
ATGCAGATCTGCTGGATTGTTATGGCTGTGACTGTCACTGCAGtctccTCAGCTCCTGTCTCAGTGTCAGTGAGAGTCGGGGACTCTGTCACTCTGCCCTGTGATGGATCAGCTTGCAGAGGGACTCCTGTAGAGCAGCTCTACATTAAGTGGCAGACAGTGGATCAGGATGTCTATGTGTTCAGGAGAGGCACAGTCTACCCCGGTCCTGGGTTTGAGAACAGAGCTGAGGTTCCCCTGGAGAGGATCAGACAGGGGGACTTCTCTCTGACCCTCCAGCACACACTGCTCTCTGATGGAGAGATATACGAGTGTTTCTGTGAGGGACAGACAAAACAGGATGTTTTTCTTGGAGATGTTCGTCTCACCATCACAGTAGAAGAGCCCAGTGACCCTCCCGTCTCTCCCCCTGCCCCCTGTGTGCTGAGCTGGGCGCtgctgggctgtgtgtctgcaggctgCCTCCTGTTCTCCGGCTGTCTCTGCTGCCTCTGGAGCAGGAGAGgtGGTGTTCAGTGTGTCGGGGCGCAGAGGAGTCCAGGGCAGAGCACGAGTGAAGGAGCAGCGCAGGTATTGTGTACAGTCCTGATGGACACACTGTAG
>TU136939
TTGTAACTGCTGTTCAGAAGCAACGAGTAGAGAATGTCTCACAGGAAAACACTGACCCGAAAACCTTATTCAATGTGAAGAATTTAAATCCGTTTATTTTTCCAACAGCGGCGTCGCCAGACATTTTTGCTGTGGCTGCGGCCCCGAACATTTTCAGTGGAGCCCACAATATAATTTGACCGTTAGCCCCCCGTCTTACTGGAGGAAACAActtcagcccccctaaaaccAGCagtctagcgacgcccctgaTCTGAATTGAGACAGTCGTGTCCAGATGATTCAGGAACTCAAGCACCgagaagcaagatcagacgTTTgtcgtttattcttttaaatgtttcatttactatttgtgaataaaatgtgtgcatattattccttaa
>TU136948
GACATACTGAGAGGATATTTGGGTTGGTGTCTCATCATGCAGATCTGCTGGATTGTTATGGCTGTGACTGTCACTGCAGtctccTCAGCTCCTGTCTCAGTGTCAGTGAGAGTCGGGGACTCTGTCACTCTGCCCTGTGATGGATCAGCTTGCAGAGGGACTCCTGTAGAGCAGCTCTACATTAAGTGGCAGACAGTGGATCAGGATGTCTATGTGTTCAGGAGAGGCACAGTCTACCCCGGTCCTGGGTTTGAGAACAGAGCTGAGGTTCCCCTGGAGAGGATCAGACAGGGGGACTTCTCTCTGACCCTCCAGCACACACTGCTCTCTGATGGAGAGATATACGAGTGTTTCTGTGAGGGACAGACAAAACAGGATGTTTTTCTTGGAGATGTTCGTCTCACCATCACAGGCCGTGAGGAGAGCAGCTCTGTCTCCTATGGGCAGCCCCTGAGCCTCCGT
>TU136956
CAGACCTGGCGCTGTACTACTGCGGGGGGAGGGCTAATGGAAGTTGGCgatttgaaaatacaatcagAATCGTCTTTACCGAAGAGCCCAGTGACCCTCCCGTCTCTCCCCCTGCCCCCTGTGTGCTGAGCTGGGCGCtgctgggctgtgtgtctgcaggctgCCTCCTGTTCTCCGGCTGTCTCTGCTGCCTCTGGAGCAGGAGAGgtGGTGTTCAGTGTGTCGGGGCGCAGAGGAGTCCAGGGCAGAGCACGAGTGAAGGAGCAGCGCAGCTGGAAGACAGTGAAGTGAGTTACACCTCTCTGGAGATCAACACTGACCCCCGACCCCCGAGATCAAGACcagaggaaaggaaagacaTTTGCACTTATTCTGAAATTAGTCAtggtagaaaataataaatgcaatagtttatttttaaattattattattgaagaattaatttcacatttccagATTTTTAAAGCTGACTGTTTCTTTGTTACTCTCTAGACCTGGCAAGGGCTGACACAGCCTCTTTCAACAGTATAGATTCTTtctatcatttcaaatatagctctcttatctctaaggctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006379 True 603 mRNA 0.56 4 3572097 3575328
TU136939 False 386 lncRNA 0.43 2 3618246 3621796
TU136948 False 462 TUCP 0.53 4 3570039 3573709
TU136956 False 577 lncRNA 0.48 4 3574710 3576156

Neighbor

gene id symbol gene type direction distance location
AMCG00006378 NA coding upstream 17685 3541718 ~ 3552354 (+)
AMCG00006374 NA coding upstream 141478 3426425 ~ 3428561 (+)
AMCG00006375 NA coding upstream 148521 3419315 ~ 3421518 (+)
AMCG00006369 NA coding upstream 215233 3352205 ~ 3354806 (+)
AMCG00006373 NA coding upstream 220818 3342539 ~ 3349221 (+)
AMCG00006384 NA coding downstream 2151 3623947 ~ 3632121 (+)
AMCG00006386 NA coding downstream 31443 3653239 ~ 3668931 (+)
AMCG00006389 NA coding downstream 127207 3749003 ~ 3763628 (+)
AMCG00006392 NA coding downstream 192817 3814613 ~ 3819824 (+)
AMCG00006396 NA coding downstream 201775 3823571 ~ 3824069 (+)
G109389 NA non-coding upstream 21051 3548614 ~ 3548988 (+)
G109301 LOC103376870 non-coding upstream 176108 3340089 ~ 3393931 (+)
G109260 NA non-coding upstream 333638 3234905 ~ 3236401 (+)
G109218 NA non-coding upstream 500811 3016779 ~ 3069228 (+)
G109217 NA non-coding upstream 541393 3004856 ~ 3028646 (+)
G109405 NA non-coding downstream 77312 3699108 ~ 3714779 (+)
G109392 NA non-coding downstream 100723 3722519 ~ 3755041 (+)
G109412 NA non-coding downstream 108091 3729887 ~ 3730840 (+)
G109396 NA non-coding downstream 150753 3772549 ~ 3774544 (+)
G109523 LOC100846954 non-coding downstream 288165 3909961 ~ 3911048 (+)
G109362 NA other upstream 63360 3503181 ~ 3506679 (+)
G109309 NA other upstream 204474 3361354 ~ 3365565 (+)
AMCG00006368 NA other upstream 283860 3274782 ~ 3286179 (+)
AMCG00006366 NA other upstream 317959 3242937 ~ 3252080 (+)
G108626 rps5,LOC107086176 other upstream 1755429 1637397 ~ 1814610 (+)
AMCG00006387 NA other downstream 15947 3637743 ~ 3648911 (+)
AMCG00006393 ppp1r11,LOC107711309 other downstream 237138 3858934 ~ 3864732 (+)
G109538 NA other downstream 341801 3963597 ~ 3963996 (+)
G109570 NA other downstream 531020 4152816 ~ 4155749 (+)
AMCG00006413 NA other downstream 537727 4159523 ~ 4167952 (+)

Expression


Co-expression Network