G109389


Basic Information

Item Value
gene id G109389
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 3548614 ~ 3548988 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU136937
TCCTGATCCACTGTCTGCCACTTAATGTAGAGCTGCTCTATAGGAGTCCCTCTGCAGGCTAATCCAACACAGGGCAGAGTGACAGAGTCCCCGACTCTCACTGACACTGTGACAGGATctgaggagaCTGCAGTGACAGTCACAGCCAGAACAATCCAGCAGATCCTCATGCTGAGACACCTGTTGAGAAGACTATTATTACTTTGAATATTATTGTTTAGTCACACAGTCCGGAGAAAATGGGTCCTGTAACCACTGATCAGAATGAAATG

Function

NR:

description
PREDICTED: retinoblastoma-like protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU136937 True 272 lncRNA 0.47 2 3548614 3548988

Neighbor

gene id symbol gene type direction distance location
AMCG00006374 NA coding upstream 120053 3426425 ~ 3428561 (+)
AMCG00006375 NA coding upstream 127096 3419315 ~ 3421518 (+)
AMCG00006369 NA coding upstream 193808 3352205 ~ 3354806 (+)
AMCG00006373 NA coding upstream 199393 3342539 ~ 3349221 (+)
AMCG00006370 NA coding upstream 247255 3292743 ~ 3301359 (+)
AMCG00006383 NA coding downstream 36467 3585455 ~ 3596853 (+)
AMCG00006384 NA coding downstream 74959 3623947 ~ 3632121 (+)
AMCG00006386 NA coding downstream 104251 3653239 ~ 3668931 (+)
AMCG00006389 NA coding downstream 200015 3749003 ~ 3763628 (+)
AMCG00006392 NA coding downstream 265625 3814613 ~ 3819824 (+)
G109301 LOC103376870 non-coding upstream 154683 3340089 ~ 3393931 (+)
G109260 NA non-coding upstream 312213 3234905 ~ 3236401 (+)
G109218 NA non-coding upstream 479386 3016779 ~ 3069228 (+)
G109217 NA non-coding upstream 519968 3004856 ~ 3028646 (+)
G109011 LOC100846954 non-coding upstream 1030080 2436058 ~ 2518534 (+)
G109405 NA non-coding downstream 150120 3699108 ~ 3714779 (+)
G109392 NA non-coding downstream 173531 3722519 ~ 3755041 (+)
G109412 NA non-coding downstream 180899 3729887 ~ 3730840 (+)
G109396 NA non-coding downstream 223561 3772549 ~ 3774544 (+)
G109523 LOC100846954 non-coding downstream 360973 3909961 ~ 3911048 (+)
G109362 NA other upstream 41935 3503181 ~ 3506679 (+)
G109309 NA other upstream 183049 3361354 ~ 3365565 (+)
AMCG00006368 NA other upstream 262435 3274782 ~ 3286179 (+)
AMCG00006366 NA other upstream 296534 3242937 ~ 3252080 (+)
G108626 rps5,LOC107086176 other upstream 1734004 1637397 ~ 1814610 (+)
AMCG00006379 NA other downstream 21051 3570039 ~ 3621796 (+)
AMCG00006385 NA other downstream 50253 3599241 ~ 3612758 (+)
AMCG00006387 NA other downstream 88755 3637743 ~ 3648911 (+)
AMCG00006393 ppp1r11,LOC107711309 other downstream 309946 3858934 ~ 3864732 (+)
G109538 NA other downstream 414609 3963597 ~ 3963996 (+)

Expression


Co-expression Network