AMCG00006706 (kcnc2,LOC103383062)


Basic Information

Item Value
gene id AMCG00006706
gene name kcnc2,LOC103383062
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 15564599 ~ 15574755 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006706
tTTATCGCCTTTGCCTCCTTGTTTTTCATCCTCGTGTCAATCACAACATTTTGCCTGGAGACTCATGAAGCTTTTAATACGATTATAAACAAAACGGAACTTATAAGGAACGATAGCCAATTGGAACAGGTCCCACAATATGAGATTGAAACGGACCCGGCACTTACATATGTGGAAGGCATTTGTGTACTCTGGTTCACTTTTGAATTCCTTGTGCGTGTGGTTTTCTGCCCTGATAAGCTTGAATTTGTTAAAAACCTCCTGAATATCATTGACTTTGTGGCAATCTTGCCATTTTACCTGGAAGTGGCTCTCAGTGGACTTTCCTCCAAAGCTGCTAAAGATGTGTTGGGCTTCCTCAGGGTCGTTAGGTTTGTCAGGATCCTACGAATCTTCAAGCTAACCCGCCATTTTGTAGGACTACGAGTGCTTGGACACACACTCCGAGCTAGCACTAATGAATTTTTGCtgcttattatatttttggCGCTGGGAGTGTTAATATTTGCCACTATGATTTATTACGCCGAAAGAATAGGAGCCAGCCCCAATGATCCAACTGCTAGTGATCACACGCAGTTCAAAAATATTCCAATTGGATTTTGGTGGGCAGTTGTCACTATGACCACCCTTGGTTACGGGGACATGTACCCTCGGACGTGGTCAGGGATGCTGGTGGGCGCCTTGTGTGCGTTGGCTGGGGTGCTCACAATAGCCATGCCTGTCCCGGTCATTGTCAATAACTTTGGAATGTACTACTCACTTGCCATGGCAAAGCAGAAGCTTCCACGCAAGAGAAAGAAGCATATCCCACAAGCCCCTCAGGGAGGCTCACCCACATACTGCAAGACAGACTTGAACATGGCTTGCAATAGTACCCAAAGTGAAGACAGTGGAGGAAGTGACCACCCCATGTCACCTGAGGAAAGACTCCCAATGAGGAGATCTAGTACCagagacaaaaacagaagaggGGGGACATGTTTCTTACTGGCAGCAGGCGATTACACATGTTCTGCAGATGGAGGGATCAGGAAAGGATATGAAAAATCCAGAAGCTTAAACAACATAGCTGGCTTGGCTGGTAATGCTCTGAGACTGTCTCCAGTAACTTCCCCCTACAGCTCACCTTGTCCACTGAGACGTTCTCGATCTCCCATTCCATCAATC

Function

symbol description
kcnc2 Predicted to enable delayed rectifier potassium channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to act upstream of or within several processes, including potassium ion transport; protein homooligomerization; and regulation of ion transmembrane transport. Predicted to be located in membrane. Predicted to be part of voltage-gated potassium channel complex. Predicted to be active in axon; dendrite membrane; and neuronal cell body membrane. Predicted to be integral component of membrane. Orthologous to human KCNC2 (potassium voltage-gated channel subfamily C member 2).

NR:

description
PREDICTED: potassium voltage-gated channel subfamily C member 2 isoform X1

GO: NA

KEGG:

id description
K04888 KCNC2, KV3.2; potassium voltage-gated channel Shaw-related subfamily C member 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006706 True 1170 mRNA 0.46 3 15564599 15574755

Neighbor

gene id symbol gene type direction distance location
AMCG00006702 NA coding downstream 637257 14905548 ~ 14927342 (-)
AMCG00006698 NA coding downstream 746083 14808861 ~ 14818516 (-)
AMCG00006696 NA coding downstream 898800 14644607 ~ 14665799 (-)
AMCG00006695 NA coding downstream 931828 14586749 ~ 14632771 (-)
AMCG00006690 LOC103382512 coding downstream 1176213 14376328 ~ 14388386 (-)
AMCG00006707 NA coding upstream 52461 15627216 ~ 15631171 (-)
AMCG00006711 NA coding upstream 111937 15686692 ~ 15691047 (-)
AMCG00006712 NA coding upstream 127619 15702374 ~ 15704607 (-)
AMCG00006718 NA coding upstream 159910 15734665 ~ 15735290 (-)
AMCG00006717 NA coding upstream 160543 15735298 ~ 15739448 (-)
G111730 NA non-coding downstream 6398 15557943 ~ 15558201 (-)
G111728 NA non-coding downstream 26763 15537476 ~ 15537836 (-)
G111630 NA non-coding downstream 769650 14794718 ~ 14794949 (-)
G111626 NA non-coding downstream 830428 14733170 ~ 14734171 (-)
G111622 NA non-coding downstream 834130 14728971 ~ 14730469 (-)
G111736 NA non-coding upstream 83243 15657998 ~ 15659412 (-)
G111759 NA non-coding upstream 153858 15728613 ~ 15729533 (-)
G111765 NA non-coding upstream 167691 15742446 ~ 15742715 (-)
G111940 NA non-coding upstream 1287922 16862677 ~ 16862967 (-)
G111945 rs16,rps16,LOC103382554 non-coding upstream 1323664 16898419 ~ 16901537 (-)
G111621 NA other downstream 810629 14712017 ~ 14753970 (-)
G111489 NA other downstream 1200177 14360228 ~ 14364422 (-)
AMCG00006663 hmga2 other downstream 2061371 13455432 ~ 13503228 (-)
AMCG00006641 mrps33,LOC106591474 other downstream 2685943 12876292 ~ 12878656 (-)
AMCG00006625 c4h11orf98,c8h11orf98,cunh11orf98,c19h11orf98 other downstream 3424194 12137182 ~ 12140405 (-)
G111767 LOC107575789 other upstream 178066 15752821 ~ 15753235 (-)
AMCG00006719 NA other upstream 306375 15881130 ~ 15896869 (-)
G112059 NA other upstream 2058136 17632891 ~ 17633445 (-)
AMCG00006754 NA other upstream 2764515 18339270 ~ 18366562 (-)
AMCG00006773 tmem243b,tmem243 other upstream 4048400 19623155 ~ 19631895 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_028412 kcnc2 coding NC_007115.7 CM002888.2 2060524 ~ 2196928 (-)