AMCG00006777 (LOC107743993)


Basic Information

Item Value
gene id AMCG00006777
gene name LOC107743993
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030134.1
NCBI id CM030134.1
chromosome length 29342575
location 19643618 ~ 19646890 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00006777
ATGGCTGCTATAGGAGTGCATCTGGGATACACATGTGGTTGCGTGGCTATTTTTAAGGATGGCAGAGCAGATGTCGTGGCCAACGATGCCGGTGATCGAGTCACCCCGGccgtggtggcgtacagagagACCGAGCAGattgtgggACTGGCAGCAAAACAAGGCAGAATAAGAAACGCTGCCAACACAGTGGTAAAAGTGAAACAGATCCTGGGCAGAAGTTTCGATGACCCagaagcacagaaacacaaggCACAGAGTAAATGCTCAGTTGTCAATAAAGATGACAAGCCGAAGTATGAGATCGACACTGGGGACTCTACCAAATTAGTTTCGCCGGATGATGTGgcaaaattgatttttaaaaagatgaaagaAACCGCACAGTCTGCTTTGGGATCAGATGTCAATGATGCCGTCATTACAGTCCCTTTTGAATTTGGAGAGGCTCAGAAAAATGCGCTACGACAAGCAGCGGAGGTGTCTGGTTTCAACGTGTTGAGATTAATTCATGAACCTTCAGCGGCACTGTTGGCTTATGGGATTGGCCAAGACTCTCCAACTGGAAAAAGCCACGTGCTTGTTTATAAGCTTGGAGGGACGTCCCTGTCCGTGACGGTGATGGAGGTGAACAGTGGACTGTATCGAGTCCTGGCCACACAGTCCGACGGCAGCATTGGTGGAGAGAGTTTTTCAGAGGCTCTCGCCCAATATTTAGCATCTGAGTTTAAAAAATCCTATAAACATGACATCACGGGCAATCCTAGAGCTATGCTGAAGCTGATGAACAGCGCAGAGGTTGCAAAGCACACCCTCTCTACTCTGGGGAGCTCAAACTGTTTTGTCGACTCTCTCTTTGATGGAATGGACTTTGACTGCAATGTCTCTAGAGTATACAGCCAATCAAAAATCTCTTGGACCAAGTCGGTCTTTCTACAAATGACGTCAGTGGTGCTGTGTGGGGGCTCTGCAAAGATCCCCAAGCTCCAGCAGATGATTCGGGATCTGTTTCCAGATGTGGAGCTTCTGAATTCCATCCCCCCCGATGAAGTCATTCCAATTGGTGCTGCCATTGAGGCCGGGTTGCTGCTGGGGAGGGACGCCCTGGAGGAGGATTCTATAACGGTGGATTGTTGTGCCAAGGATATTCTTGTCAAGgaGGCTGATGATTCGGGGGCGGACATCTATACAGTTTTGTTACCGTCTGGCACCCCTCTGCCTGCAAGGAGGCAGCACGTTCTGCAGAGTCCAGGGAGCCTCTCTTCGGTCTGCCTGGAGCTGTACCAGTCCCAAGGGCACAACTGCTCCATAGAAGAGAAACTGGCACAGGTAACCTTGTGCAAAGAATATCTAGTTGTTTAA

Function

NR:

description
PREDICTED: heat shock 70 kDa protein 14-like

GO:

id name namespace
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005524 ATP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00006777 True 1362 mRNA 0.49 12 19643618 19646890

Neighbor

gene id symbol gene type direction distance location
AMCG00006776 NA coding downstream 50387 19569734 ~ 19593231 (-)
AMCG00006775 NA coding downstream 235642 19403281 ~ 19407976 (-)
AMCG00006768 NA coding downstream 307322 19307131 ~ 19336296 (-)
AMCG00006767 NA coding downstream 508891 19095536 ~ 19134727 (-)
AMCG00006765 NA coding downstream 597557 19006380 ~ 19046061 (-)
AMCG00006780 NA coding upstream 32711 19679601 ~ 19781353 (-)
AMCG00006785 prpf18 coding upstream 294167 19941057 ~ 19947697 (-)
AMCG00006790 cpt1b,LOC100329197,LOC106573415 coding upstream 324737 19971627 ~ 19981435 (-)
AMCG00006788 NA coding upstream 335276 19982166 ~ 19984437 (-)
AMCG00006789 NA coding upstream 339857 19986747 ~ 19999501 (-)
G112292 NA non-coding downstream 73946 19568517 ~ 19569672 (-)
G112290 grm3,LOC107090533,LOC106924857 non-coding downstream 77603 19564956 ~ 19566015 (-)
G112289 grm3,LOC108263977,LOC108444204 non-coding downstream 101650 19541103 ~ 19541968 (-)
G112288 LOC108263977,LOC105018424 non-coding downstream 105825 19537205 ~ 19537793 (-)
G112287 NA non-coding downstream 128614 19514799 ~ 19515004 (-)
G112410 NA non-coding upstream 432001 20078891 ~ 20079411 (-)
G112496 NA non-coding upstream 1067193 20714083 ~ 20756786 (-)
G112557 NA non-coding upstream 1350376 20997266 ~ 20997529 (-)
G112562 NA non-coding upstream 1368483 21015373 ~ 21016048 (-)
G112563 NA non-coding upstream 1370311 21017201 ~ 21017740 (-)
AMCG00006774 meig1,LOC107581293,LOC107744135,LOC107592215 other downstream 7693 19633093 ~ 19635925 (-)
AMCG00006773 tmem243b,tmem243 other downstream 11723 19623155 ~ 19631895 (-)
AMCG00006754 NA other downstream 1277056 18339270 ~ 18366562 (-)
G112059 NA other downstream 2010173 17632891 ~ 17633445 (-)
AMCG00006719 NA other downstream 3746749 15881130 ~ 15896869 (-)
G112420 NA other upstream 588966 20235856 ~ 20236206 (-)
AMCG00006807 NA other upstream 1000430 20647320 ~ 20653659 (-)
AMCG00006813 NA other upstream 1207167 20854057 ~ 20964562 (-)
AMCG00006841 NA other upstream 2483605 22130495 ~ 22197664 (-)
AMCG00006854 NA other upstream 3306286 22953176 ~ 22958306 (-)

Expression


Co-expression Network