AMCG00007405


Basic Information

Item Value
gene id AMCG00007405
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 17823894 ~ 17848724 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007405
AGCGCGCAGTGTGTGAGCGAGCGGTTAGTGATTAACAGCGTCCGAACTTTGGGCTGAAACAGTTCCGACACCTCGCGTTCTCGAACCCGAATGTTCGCCGCTGGGCGGATCGGCGGGGTTCGATCGCACGGATTGGCAGGGCGACCAGCGCGCCCCATCTCGGGCGTTGTGCCTGTTTACGGACCCAAGTCTCCCCCCAGCGCTGGTTCTTTTCAATTGAGCCCGGATACAGCGACCCAGTGTCCGGTGGATTGCGGCGCACCCAGCCCGGGGAGATGCTGTTCGGTTCGTCTGGTCCGTCCAGGCGCGTTCCTCACCCCCGTCCTGTCGTGAATCTCGGAGGATTTTAAGGACTTGCTCgggtggggggggacaaaaGCGGACCGTGCTTTGGTAGAGACGAGAGACAAAAGCGGGGTTGACGGGGTTTATAACGACCGAGGGACGGCGAGGACTGTTGTGGAGCCCGACCCCCCGCCGCCGTGTGTCCGGAGGGCTGCGTGTGCAGTAAACGCGTACTCGGCTCCCGGATTATTAACCGGTGTTTCCAGGATTTCACACCGAAAAGGGACCCTCTGAAAATGTATCCGCAGGGCCGACACCCGGCACCACATCAACCTGGACAGCCAGGGTTCAAATTCACTGTGGCGGAGTCCTGCGACAGGATTAAAGACGAGTTTCAGTTCTTACAAGCGCAGTATCACAGtcTTAAGGTGGAGTATGACAAACTGGCCAACGAGAAGACGGAGATGCAGCGTCACTATGTTATGTACTACGAGATGTCTTACGGGCTGAATATTGAAATGCACAAACAGACGGAGATTGCTAAACGGCTCAATGCAATTCTAGCTCAGATCATGCCTTTTCTGTCACAAGAGCACCAACAGCAGGTTGCGCAGGCTGTTGAGCGTGCCAAGCAAGTGACAATGACTGAGTTGAATGCCATCATCGGGcagcagcagctccaggcACAGCACCTTTCTCACGCGGCCCACGGCCCCCCGGtgcagctgcccccccacccctcaggACTGCAGCCTTCCGGCATCCCCCCTGGGACTGGCTCGGGCTCGGGCCTGCTGGCCCTGGGAGCGCTGGGCAGCCAGGCCCACCTGCCCGTCAAGGATGAGAAGAACCATCACGACCTGGAGCACAGAGGTGAGGAGAGGACACTGCGCTGCCTTGGCCAGAACAGCACTATATGGAGTGGATTGTCCAGTCATGGGATTGTGATGAGTTTTACTCTTCATGTGTATActaatcttttattttctgcttcctTCTTGGCTAATCATCTTTTCCATTGGTTAAAGAGCGAGAATCCAGTACGGCCGGTCACAGTCGATTTAATATCCGAGGACTCGGTGCCGGCGCGCTCAGATGCTCGGATCACGCCTTGTTGCCTCACGAAGGCCGCCCTGCATTGCCGAGTGAACTCGCCTGTCCGCCCCCTTCATCGTCTGCCCCAGCGTGAGCACCGACAGCCCACAGCTTCAGATGGAGCAGTCCATTCTGACCCATTGAAagatttttatgttgttatggtCCGATTAGCCTTTTATTTAAGAGTCCTTCCCCTGCATTTGCAGAATAACTCCGTGTCCCCGTCGGACAGCCTGAGGGCCGCCAGTGAGAAGCACCGCGGCTCCTCGGACTACAGCATCGACACCAAGAAACGCAAAGTGGAGGAGAAGGACAACCTGAGCAGATATGACAGCGACGGGGACAAGAGCGATGACTTGGTGGTAGATGTGTCCAATGAGGCGAGTACAGATCTGACTGggttgctttgtgtgtgtgcgcgtctgCGTGTGCGAACTGAGGGCGAGACGGTGCGTTTCAAGTGCTCTGTTCTCTCCCGTGTGCAGGATCCGGCAACACCCCGTGTCAGCCccgcccactcccccccagagaACGGCCTGGACAAGTCCCGCGTGCTGAAGAAAGATGCCCCCAACAGCCCGGCCTCGGTGGCATCCTCCAGCAGCACCCCCTCCTCCAAGACCAAGGACCTGGTCCATGTAAGTGTGGCTGGACTCAGGGTGTCGCAGTGCGGGACGAACGACAAGTCCTCAACTCCAGGCCTGAAGTCCAACACACCCACCCCGCGGAATGACGCCCCCACCCCCGGCACCAGCACCACCCCTGGGCTGAGGCCCGTCTTGGGCAAGCCCCCTGGCATGGAGGGACTAGcccCTGCCCTGCGGACACCCTTGTCCATCTCAGGCTCCTATGCCGCACCCTTTGCTATGATGGGCCACCACGAGATGAATGGTTCCCTCACCAGCCCGGTCTACGCCGGCCTGCACATCTCCCCACAGATGAGTGCTGCAGCGGCCGCTGCATATGGCCGATCGCCCATGgtgagtctgtctctctctgtctctgtccccagTGCTACTGTAACAGCCTCGCCCTGCTATGAGCTCCAGACACCCATGACGTCGAGCTTATGTGGGTTTGATCACCCCCACATGAGAGCGCCCGGCCTCCCCGCCAGTCTCACCTCCATCTCGGGTGGAAAACCAGCGTACTCCTTCCACGTGAGTGCAGATGGGCAGATGCAGCCGGTGCCCTTCCCCCACGACGCTCTGATTGGCCCAGGCATCCCACGCCACGCCCGACAGATCAACACGCTGGCCCACGGGGAGGTGGTCTGCGCCGTCACCATCAGCAACCCCACGCGCCATGTCTATACTGGTGGCAAAGGCTGTGTCAAGATCTGGGACATCAGCCAGCCTGGCAGCAAGAGCCCCGTCTCCCAACTGGACTGCCTGAACAGGGATAACTACATCCGCTCCTGCAAGCTCCTCCCGGATGGCCGCACGCTCATTGTGGGTGGGGAGGCCAGCACTCTGACCATCTGGGACCTGGCTTCCCAGACTCCCCGGATCAAGGCGGAGCTCACCTCCTCTGCACCGGCCTGCTACGCCCTGGCCATCAGCCCCGATGCCAAGGTGTGCTTCTCCTGCTGCAGCGATGGCAACATCGCTGTGTGGGACCTGCACAACCAGACTCTGGTCAGGCAGTTCCAGGGGCACACGGACGGAGCCAGCTGCATCGATATCTCTCATGACGGCACCAAGCTGTGGACAGGGGGCCTGGATAACACCGTGCGCTCCTGGGACCTGAGGGAAGGGCGACAACTGCAGCAGCACGATTTTACCTCTCAGATCTTCTCCCTGGGGTACTGTCCCACGGGCGAGTGGCTGGCCGTGGGGATGGAGAGCAGCAACGTGGAAGTGCTGCACCACACCAAGCCCGACAAGTACCAGCTGCACCTGCATGAGAGCTGTGTTCTCTCGCTGAAGTTCGCCTACTGTGGCAAATGGTTCGTGAGCACTGGGAAGGACAATCTGCTGAATGCCTGGAGGACTCCCTACGGTGCCAGCATTTTCCAGTCGAAGGAATCTTCCTCTGTCTTAAGTTGTGACATTTCGGCCGACGACAAGTACATCGTCACGGGCTCTGGGGACAAGAAGGCCACAGTGTACGAGGTGATCTACTAG

Function

GO: NA

KEGG:

id description
K04497 GRO, TLE; groucho

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007405 True 3509 mRNA 0.59 23 17823894 17848724

Neighbor

gene id symbol gene type direction distance location
AMCG00007401 NA coding downstream 175122 17592301 ~ 17648772 (-)
AMCG00007399 NA coding downstream 293295 17521789 ~ 17530599 (-)
AMCG00007392 kmt5b,LOC102794872 coding downstream 452638 17353112 ~ 17371256 (-)
AMCG00007393 NA coding downstream 475006 17327340 ~ 17348888 (-)
AMCG00007389 NA coding downstream 586168 17200860 ~ 17237726 (-)
AMCG00007406 kif23,LOC107686310 coding upstream 95047 17943771 ~ 17958062 (-)
AMCG00007411 NA coding upstream 113997 17962721 ~ 17978522 (-)
AMCG00007409 LOC105906560,LOC106562708,LOC106562601 coding upstream 131518 17980242 ~ 17991860 (-)
AMCG00007412 LOC107100407 coding upstream 190111 18038835 ~ 18048218 (-)
AMCG00007410 coro2b,LOC105906559,LOC106562700 coding upstream 216702 18065426 ~ 18077532 (-)
G23624 NA non-coding downstream 576 17821767 ~ 17823318 (-)
G23620 NA non-coding downstream 49048 17774551 ~ 17774846 (-)
G23580 NA non-coding downstream 165336 17658352 ~ 17658558 (-)
G23566 NA non-coding downstream 240454 17581606 ~ 17583440 (-)
G23550 NA non-coding downstream 312100 17511524 ~ 17511794 (-)
G23629 NA non-coding upstream 57377 17906101 ~ 17906408 (-)
G23663 NA non-coding upstream 124182 17972906 ~ 18062992 (-)
G23676 NA non-coding upstream 223331 18072055 ~ 18074005 (-)
G23745 NA non-coding upstream 465427 18314151 ~ 18403277 (-)
G23799 NA non-coding upstream 770561 18619285 ~ 18620731 (-)
AMCG00007375 NA other downstream 1201989 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 1478314 16320997 ~ 16345580 (-)
AMCG00007366 NA other downstream 1509862 16237461 ~ 16314032 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 3790682 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 3877829 13945643 ~ 13946065 (-)
G23661 NA other upstream 206746 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 353735 18202459 ~ 18208020 (-)
G23838 NA other upstream 927636 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 1942977 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 2066422 19915146 ~ 19923153 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_012770 tle3a coding NC_007129.7 CM002902.2 20225961 ~ 20257511 (+)
grasscarp (Ctenopharyngodon idella) CI01000013_04069517_04083528 TLE3, TLE3A coding CI01000013 null 4069045 ~ 4083746 (-)