CI01000013_04069517_04083528 (TLE3, TLE3A)


Basic Information

Item Value
gene id CI01000013_04069517_04083528
gene name TLE3, TLE3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4069045 ~ 4083746 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_04069517_04083528.mRNA
ATCTTTTGGCTCTGACTGCTGCTTAGACCATGTGTGTACAATTTTCGGATGGTGGAAATTCATAAATTTGGGATTTATAAAACAGATTTTTTGTGGTCAGCCCTTAAGTCTTTTATCACATTCGTCTGCTTCCAACATGTCCTCAGGGACTGTCTGCATTATTTAACATCTGCTAAACAACAGGAGTTGGCAGTCATTTTGTTGTGGAGACATGTGAAATGAACAGAATCAACTTCTGCAGGCTTTTCTTTTTAGTGCAATTACATATCAGTGGTGATAATGGTAGAGTTTGGAGTGTGCCGAGTCAAGCGGTTCTGATTGCCGTGACTGAGATTGCCAAAAGGCTCAATGCGATTCTAGCCCAGATTATGCCTTTTCTGTCACAAGAGCACCAACAGCAAGTAGCACAAGCTGTTGAACGTGCAAAGCAAGTGACAATGACTGAACTGAATGCTATCATCGGGCAGCAGCAGCTCCAGGCCCAGCACCTCTCTCATGCTGCCCACGGACCTGTGGCTTTACCTCCCCACCCTTCTGGCCTTCAGCCACCAGGAATTCCACCAGTCACCGGCTCTGGCTCGGGCCTGCTGGCTCTGGGAGCCCTGGGAAGTCAGCCACACTTGCCAGTGAAGGATGAAAAAAACCACCATGACCTGGAGCACCGAGAAGATGGAGGGAGTGAGAACAACTCCATCTCTCCATCAGACAGTCTGCGCACAACCAGCGAGAAACACCGTGGCTCCTCCGATTACAGCTTGGACTCCAAGAAACGCAAAGTGGAGGACAAGGACAGCATGAGCCGATATGACAGTGACGGAGACAAAAGTGATGATCTGGTGGTTGATGTATCCAACGAGGACCCTGCCACGCCCAGAGGAAGCCCTGCCCACTCCCCTCCTGAGAATGGCATAGATAAGCCCCGCCCAGCAAAGAAGGATACGCCCAACAGCCCCGCCTCTGTGGCCTCTTCCGGCAGCACCCCCTCTTCTAAAAACAAGGAGCATGGCCATTCCAACACCCCCACGCCTCGTAACGATGCCCCCACCCCGGGTACCAGCACCACCCCTGGGTTGCGGCCAATCCTGGGCAAGCCTCCGATGGAAGTTCTAAGTGAGTTCATAATCAACGTCTGCAGAGGTGTACTGTCGCCTCCTGCATCATACAGCACAAACGCAGCCAATATTGTAACCAAAAGAGAGGAGTTTGCATATGGAAATAATCCAAAGCTTCAGCAAATTTTTAAGCTCGCCTTTTTAACAGAGCTTAAAGCAGCTTTCGGAAAACTAGTCTTTGAAGCAGCTCTGTCCGCCCCTGCTCTGCGCACCCCCCTCTCTTACCCAACTCCCTTTGCCATGATGAGCCACCATGAGATGAATGGTTCTCTGACCAGCCCTGGAGTCTATGCCGGCCTTCACATCTCTCCTCAGATGAGTGCGGCCGCTGCTGCTGCCTATGGACGCTCGCCCATGGGTTTCGAGCACCCTCATATGAGAGCTCCCGGCCTCCCTGCTAGCCTCACCTCAATCTCTGGAGGAAAACCAGCCTACTCTTTCCACGTTAGCGCTGACGGACAGATGCAGCCCGTGCCCTTCCCTCCAGATGCTCTCATTGGTCCAGGGATCCCACGCCATGCCCGTCAGATTAACACACTCAGTCATGGGGAGGTTGTGTGTGCCGTGACTATCAGCAACCCCACTCGCCACGTCTACACTGGTGGCAAGGGCTGTGTTAAGATCTGGGACATCAGTCAGCCTGGAAGCAAAAGTCCAGTGTCTCAACTTGACTGCCTGAACAGGGACAACTACATTCGGTCCTGTAAGCTGTTGCCTGACGGCCGCACTCTTATCGTCGGAGGGGAGGCTAGCACTTTGACCATTTGGGATCTTGCCTCCCAGACACCCCGCATCAAAGCCGAGCTGACCTCCTCCGCACCGGCCTGCTACGCGCTGGCCATCAGCCCTGACGCCAAGGTGTGCTTCTCCTGCTGCAGCGACGGAAACATCGCTGTCTGGGACCTCCACAACCAGACCCTCGTCAGGCAATTCCAAGGCCACACAGATGGTGCCAGCTGCATTGATATCTCTCATGATGGCACCAAGCTCTGGACAGGTGGCCTTGATAACACAGTCCGCTCCTGGGACCTGAGAGAGGGCCGGCAACTCCAACAGCACGACTTCACGTCTCAGATCTTCTCCCTAGGCTACTGTCCTACGGGTGAGTGGCTGGCTGTCGGCATGGAAAGCAGCAATGTGGAGGTGCTCCACCACACCAAGCCTGACAAGTACCAGCTGCACCTTCATGAGAGCTGCGTTCTCTCTCTCAAGTTTGCCTACTGTGGTAAATGGTTTGTGAGCACTGGGAAGGACAATCTGTTGAATGCATGGAGGACTCCCTACGGCGCCAGCATATTCCAGTCAAAGGAATCATCCTCTGTCCTGAGCTGTGACATATCAGCCGATGACAAGTACATTGTTACAGGCTCTGGAGACAAGAAGGCCACGGTGTATGAAGTGATCTACTAGACTGAGAGGTAACAGACTGGAGCACTCAGGCCTCTGGAGGAGGAAAAGGGGACATACAGCTTCTCACTCCAGTGACTCTCCTAGTCAAACAGACAGGAACAGCCCTTGTCTGTCTGTCTGACTGTCTGTCTCACACTCACTGACTTTTTACTGACTGACCGCGGAGGTGGACGAGTGGATACTGGGGTGACCCTGGACTGAGCTGCCTGGACTAAGACACGAATGTGCAGCCCTACAGACCCCAAACACTCGGCCCAGTTCATATGGCACTAGAGAACACTCAATGTTTCCTTTCTCGCTGTTTTTTTTGTTTTGTTTTTGTTTTTTGCTTCAAATCTTTTTGTTTTCTTATGGTTTTTTTTTCCTCACTATGCAGTGAGAACGTTCCATAATGCATCGTGAAGCAGCGCTTCGTTCTGAAACTTCATCTGTGTGGAGGGTATGTGAAAAGTGTACATAATGGAGTATTAAA

Function

symbol description
tle3a Predicted to enable transcription corepressor activity. Acts upstream of or within regulation of retinoic acid biosynthetic process and sclerotome development. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including axis; central nervous system; cranial ganglion; mesoderm; and neural rod. Orthologous to human TLE3 (TLE family member 3, transcriptional corepressor).
tle3 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of canonical Wnt signaling pathway and negative regulation of cold-induced thermogenesis. Located in nucleoplasm. Part of beta-catenin-TCF complex.

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG:

id description
K04497 GRO, TLE; groucho

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_04069517_04083528.mRNA True 2994 mRNA 0.52 18 4069045 4083746

Neighbor

gene id symbol gene type direction distance location
CI01000013_03938659_03945995 DDB2 coding downstream 122746 3938503 ~ 3946299 (-)
CI01000013_03929711_03933888 KBTBD4 coding downstream 134927 3928833 ~ 3934118 (-)
CI01000013_03918402_03926395 RAPSN coding downstream 142650 3918172 ~ 3926395 (-)
CI01000013_03911586_03916513 NA coding downstream 152411 3910609 ~ 3916634 (-)
CI01000013_03897674_03902314 AGK coding downstream 166731 3896594 ~ 3902314 (-)
CI01000013_04091772_04094858 NA coding upstream 6759 4090505 ~ 4094858 (-)
CI01000013_04117349_04119235 NA coding upstream 32516 4116262 ~ 4120153 (-)
CI01000013_04186280_04202524 NA coding upstream 101790 4185536 ~ 4202524 (-)
CI01000013_04206025_04212137 MORF4L1B, MORF4L1 coding upstream 121975 4205721 ~ 4212137 (-)
CI01000013_04215370_04216413 RXFP3.3A3 coding upstream 131215 4214961 ~ 4216592 (-)
G80452 NA non-coding downstream 44548 4024134 ~ 4024497 (-)
G80440 NA non-coding downstream 54740 4014070 ~ 4014305 (-)
G80409 NA non-coding downstream 105841 3962977 ~ 3963204 (-)
G80408 NA non-coding downstream 106197 3962522 ~ 3962848 (-)
G80407 NA non-coding downstream 106666 3962138 ~ 3962379 (-)
G80477 NA non-coding upstream 14998 4098744 ~ 4098963 (-)
G80491 NA non-coding upstream 30532 4114278 ~ 4114512 (-)
G80639 NA non-coding upstream 51487 4135233 ~ 4135483 (-)
G80651 NA non-coding upstream 74295 4158041 ~ 4158243 (-)
G80652 NA non-coding upstream 74644 4158390 ~ 4158730 (-)
G80443 NA other downstream 3028 4064942 ~ 4066017 (-)
G80399 NA other downstream 162805 3904067 ~ 3906240 (-)
G80271 NA other downstream 345438 3719433 ~ 3723607 (-)
G80262 NA other downstream 501508 3565171 ~ 3567537 (-)
G79690 NA other downstream 1253653 2813247 ~ 2815392 (-)
CI01000013_04561253_04567647 MAP2K1 other upstream 473122 4560340 ~ 4567647 (-)
G81032 NA other upstream 665063 4748809 ~ 4750561 (-)
G81547 NA other upstream 1655780 5739526 ~ 5744038 (-)
CI01000013_05883498_05884071 CHTF8 other upstream 1798303 5882049 ~ 5884071 (-)
CI01000013_07339918_07367774 NA other upstream 3255963 7339709 ~ 7367774 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00007405 NA coding CM030123.1 CM030123.1 17823894 ~ 17848724 (-)