Gene
RNA
| Item | Value |
|---|---|
| gene id | G80409 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 3962977 ~ 3963204 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU91542 | True | 228 | lncRNA | 0.28 | 1 | 3962977 | 3963204 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000013_03938659_03945995 | DDB2 | coding | downstream | 16678 | 3938503 ~ 3946299 (-) |
| CI01000013_03929711_03933888 | KBTBD4 | coding | downstream | 28859 | 3928833 ~ 3934118 (-) |
| CI01000013_03918402_03926395 | RAPSN | coding | downstream | 36582 | 3918172 ~ 3926395 (-) |
| CI01000013_03911586_03916513 | NA | coding | downstream | 46343 | 3910609 ~ 3916634 (-) |
| CI01000013_03897674_03902314 | AGK | coding | downstream | 60663 | 3896594 ~ 3902314 (-) |
| CI01000013_04069517_04083528 | TLE3, TLE3A | coding | upstream | 105841 | 4069045 ~ 4083746 (-) |
| CI01000013_04091772_04094858 | NA | coding | upstream | 127301 | 4090505 ~ 4094858 (-) |
| CI01000013_04117349_04119235 | NA | coding | upstream | 153058 | 4116262 ~ 4120153 (-) |
| CI01000013_04186280_04202524 | NA | coding | upstream | 222332 | 4185536 ~ 4202524 (-) |
| CI01000013_04206025_04212137 | MORF4L1B, MORF4L1 | coding | upstream | 242517 | 4205721 ~ 4212137 (-) |
| G80408 | NA | non-coding | downstream | 129 | 3962522 ~ 3962848 (-) |
| G80407 | NA | non-coding | downstream | 598 | 3962138 ~ 3962379 (-) |
| G80404 | NA | non-coding | downstream | 1400 | 3959843 ~ 3961577 (-) |
| G80402 | NA | non-coding | downstream | 14157 | 3946851 ~ 3948820 (-) |
| G80382 | NA | non-coding | downstream | 122843 | 3837914 ~ 3840134 (-) |
| G80440 | NA | non-coding | upstream | 50866 | 4014070 ~ 4014305 (-) |
| G80452 | NA | non-coding | upstream | 60930 | 4024134 ~ 4024497 (-) |
| G80477 | NA | non-coding | upstream | 135540 | 4098744 ~ 4098963 (-) |
| G80491 | NA | non-coding | upstream | 151074 | 4114278 ~ 4114512 (-) |
| G80639 | NA | non-coding | upstream | 172029 | 4135233 ~ 4135483 (-) |
| G80399 | NA | other | downstream | 56737 | 3904067 ~ 3906240 (-) |
| G80271 | NA | other | downstream | 239370 | 3719433 ~ 3723607 (-) |
| G80262 | NA | other | downstream | 395440 | 3565171 ~ 3567537 (-) |
| G79690 | NA | other | downstream | 1147585 | 2813247 ~ 2815392 (-) |
| G78296 | NA | other | downstream | 3936080 | 26528 ~ 26897 (-) |
| G80443 | NA | other | upstream | 101738 | 4064942 ~ 4066017 (-) |
| CI01000013_04561253_04567647 | MAP2K1 | other | upstream | 593664 | 4560340 ~ 4567647 (-) |
| G81032 | NA | other | upstream | 785605 | 4748809 ~ 4750561 (-) |
| G81547 | NA | other | upstream | 1776322 | 5739526 ~ 5744038 (-) |
| CI01000013_05883498_05884071 | CHTF8 | other | upstream | 1918845 | 5882049 ~ 5884071 (-) |
