CI01000013_03938659_03945995 (DDB2)


Basic Information

Item Value
gene id CI01000013_03938659_03945995
gene name DDB2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3938503 ~ 3946299 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000013_03938659_03945995.mRNA
TGTGAATACTTGCCAACATTTAGTGCCATCTAGTGGATAAATTCTGTATCGCGCTCAACGATTACAAAACAATCGGCCTCATACGTCACTGAATGTAGTCAAAATGCGTGTCTGTGCACGTGTAGAGGTGTTGAGCCGAGAGGGTTTGCCAATGTAATGTGGACCGCTTTATATTTGCAGGTAAGAAATAAAGTGCGTGATTCTAGTCGATCGGATCGTATCTACGACTTATCTTTATGTGTAACTCATAACTGACATGCAATGTCTCTTTGTTGACCTTTTTCAAGTAGAAAGTAGACTTTAAATGGCGCGAGGAAGGGCTCAGACAGACTCAACTGCTTCGAAGCAGGCGAAGAATGTCAATTCAAAGAAAAGACCGAATGAAGAACCTCCTCAAACACTCTCCAAAAAGCTCAAAGCCAAACAGCAAGGCAAGACAGCATCAAAAACGGACACCTACATACAAGCAAGTGTGAAATGGACTGGAAGTCAAAAGAAAGTGGGCCAAACAAGTATCCTTCACTACATTTACAAAAGCTCCTTGGGACAGAGCATCCATGCTCAACTGCGCCAGTGTCTGCAAGAGCCTTTCGTACGCTCACTTGGAACCTACAAACTTCACCGCACAGCCAGTCCCTTCGATCGGAGAGTCACTTGTCTGGAATGGCATCCCACCCATCCCACTACTGTTGCAGTGGGTTCCAAGGGTGGAGACATCATCCTGTGGGATTACGATGTGCTGAATAAGAGAACTTTCATACAGGGGAAGGGAGCTGGTGACTTTATTGGGGAGATGAAGTTCTGCCCCACAGATGTGTCCAAAATCTTTGTCGCTTCTGGTGATGGCACAATCAGCGTGCAGAGTTTTGAGGGCCTCCAAAGTCAGATATTGTCTCGAACCCCAGACTGTGGCCATGACCACCATGATCTTTGTTACTGGTACTGCTGTGTGGACGTGTCCGTTAGCCGTCAGATGCTTGCGACTGGGGACAGCACTGGAAGACTTCTCCTGCTTGGCCTGGATGGACATGAGATTTTCAAAGAGAAGCTGCACAAAGCCAAGGTGACCCATGCAGAATTCAACCCTCGCTGTGACTGGCTGATGGCAACATCCTCTGTTGATGCTACGGTCAAGCTGTGGGACCTACGAAATATTAAAGACAAAAGCAGTTATATCGCTGAAATGCCTCATGAGAAACCTGTCAATTCTGCGTATTTTAATCCGACAGACAGCACCAAGCTCCTTACTACAGACCAGAGGAACGAGATCAGAGTATATTGTTCATATGACTGGTCTAAACCTGATCAAATAATTCTTCATCCTCATCGGCAGTTCCAGCACTTAACGCCCATCAAGGCAACCTGGCATCCCATGTATGACCTCATTGTGGCTGGCCGTTACCCAGATGATCAAGTATTAGTCAATGACAAGAGAACTATTGACATTTATGATGCCAACAGTGGTGATCTTGTGCACCAGCTGAGAGACCCCAATGCTGCTGGTATCATATCTCTCAACAAGTTCAGTTCAAATGGGGATGTGCTGGCTTCTGGAATGGGCTATAACATTTTAATCTGGAACCGAGAGGACACGCTGAACAGTATTAGTCGTAAACAGACAGCGGAGAGAGTGGAGGAGAGTGGAGGAAGAGCCGGAACCTCCAGATCCCAGCGCAGCACCCAGCAGCGCACGAACAGAGGCGGAAGAGCAGCTGCTGATGATGCCAAGCTCAAGAAAAAGCTGGCGTCATTGTCTTCAACAGAGGCCAAGTCCAAGAGCAAGAGCAAGACCGAATGCAAGACATCAAAATTGAAGAAAAAGTGAGAAAGAATATACTGAGCTTTAAGACTAGATATTTAGTGGATCAGGTCTCATTTGTTCTGTTCGTTTCAATATATAAATCCTGTAACGATAAAAATTAAAATAAGGACTCGTTACCTTTTATAGGACCTAAAATATGTATATTCTGTTCAAAATAAA

Function

symbol description
ddb2 Predicted to enable DNA binding activity. Predicted to contribute to damaged DNA binding activity. Predicted to be involved in DNA repair and response to UV. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be part of Cul4-RING E3 ubiquitin ligase complex. Predicted to be active in nucleus. Is expressed in central nervous system and neurons. Human ortholog(s) of this gene implicated in xeroderma pigmentosum and xeroderma pigmentosum group E. Orthologous to human DDB2 (damage specific DNA binding protein 2).

GO:

id name namespace
GO:0080008 Cul4-RING E3 ubiquitin ligase complex cellular_component

KEGG:

id description
K10140 DDB2; DNA damage-binding protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000013_03938659_03945995.mRNA True 1981 mRNA 0.45 10 3938503 3946299

Neighbor

gene id symbol gene type direction distance location
CI01000013_03929711_03933888 KBTBD4 coding downstream 4385 3928833 ~ 3934118 (-)
CI01000013_03918402_03926395 RAPSN coding downstream 12108 3918172 ~ 3926395 (-)
CI01000013_03911586_03916513 NA coding downstream 21869 3910609 ~ 3916634 (-)
CI01000013_03897674_03902314 AGK coding downstream 36189 3896594 ~ 3902314 (-)
CI01000013_03879587_03884308 WEE2 coding downstream 54195 3879333 ~ 3884308 (-)
CI01000013_04069517_04083528 TLE3, TLE3A coding upstream 122746 4069045 ~ 4083746 (-)
CI01000013_04091772_04094858 NA coding upstream 144206 4090505 ~ 4094858 (-)
CI01000013_04117349_04119235 NA coding upstream 169963 4116262 ~ 4120153 (-)
CI01000013_04186280_04202524 NA coding upstream 239237 4185536 ~ 4202524 (-)
CI01000013_04206025_04212137 MORF4L1B, MORF4L1 coding upstream 259422 4205721 ~ 4212137 (-)
G80382 NA non-coding downstream 98369 3837914 ~ 3840134 (-)
G80377 NA non-coding downstream 102647 3823318 ~ 3835856 (-)
G80365 NA non-coding downstream 152632 3785295 ~ 3785871 (-)
G80364 NA non-coding downstream 155821 3782252 ~ 3782682 (-)
G80326 NA non-coding downstream 206706 3731598 ~ 3731797 (-)
G80402 NA non-coding upstream 552 3946851 ~ 3948820 (-)
G80404 NA non-coding upstream 13544 3959843 ~ 3961577 (-)
G80407 NA non-coding upstream 15839 3962138 ~ 3962379 (-)
G80408 NA non-coding upstream 16223 3962522 ~ 3962848 (-)
G80409 NA non-coding upstream 16678 3962977 ~ 3963204 (-)
G80399 NA other downstream 32263 3904067 ~ 3906240 (-)
G80271 NA other downstream 214896 3719433 ~ 3723607 (-)
G80262 NA other downstream 370966 3565171 ~ 3567537 (-)
G79690 NA other downstream 1123111 2813247 ~ 2815392 (-)
G78296 NA other downstream 3911606 26528 ~ 26897 (-)
G80443 NA other upstream 118643 4064942 ~ 4066017 (-)
CI01000013_04561253_04567647 MAP2K1 other upstream 610569 4560340 ~ 4567647 (-)
G81032 NA other upstream 802510 4748809 ~ 4750561 (-)
G81547 NA other upstream 1793227 5739526 ~ 5744038 (-)
CI01000013_05883498_05884071 CHTF8 other upstream 1935750 5882049 ~ 5884071 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location