G23439 (LOC106560706,LOC103380370,LOC107104255,LOC105904524)


Basic Information

Item Value
gene id G23439
gene name LOC106560706,LOC103380370,LOC107104255,LOC105904524
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16992915 ~ 16993435 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU29373
CAGATCCACCTTACAATGCAGAGGTGTCCAGTTTATACTGTAGCATTCAGTTCCTGGTGCGTAATCGGAGTCCATGGAGATCTCCAAGTCTGCAATTGAATCCCAAGTGTAACAGAACTCGGTCTTGTTCAACCAGCACAGGTTCTTCACGAAGGGCACTTCCAAGTCCGGAAAGTTTCCCACGTCAATCTCCACAAAGGTCTTCTCCTCGGTCAGTGTCTGTATTATCAGAGAATGGGTCCTTCTCTCCCAGATGAGTCCGCTGAAACTGCCCTTCAGGATCCAGTTCTTATTGGGCTGATCCACCACTTGCCAGTAAATGATCCCAATGGTCATAACGAAGAAGATGGCCACACCGAGACAGGCGATTGCGCCCTTCCACGTTTCGTTCATTTCCTTCAGACCCGAGTCCCATGTTACTTCTGGGATGGGGCTGGGGTTCCTATTTCGAGTGTGAGGCATAttgtttgaaacaaaataatcaggAAAAAAACTATCAGTTCAAAAAGACCATGGCTCAA

Function

NR:

description
PREDICTED: SITS-binding protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU29373 True 521 lncRNA 0.47 1 16992915 16993435

Neighbor

gene id symbol gene type direction distance location
AMCG00007384 NA coding downstream 14142 16971302 ~ 16978773 (-)
AMCG00007380 LOC103466153,LOC107104254,LOC106927356,LOC106962050,LOC101067251,LOC102221597,LOC107389017 coding downstream 260070 16712092 ~ 16732845 (-)
AMCG00007376 tmem86a,LOC107707555,LOC107675270,LOC107709947,LOC107688565 coding downstream 322280 16665551 ~ 16670635 (-)
AMCG00007373 b4galnt4 coding downstream 525228 16455533 ~ 16467687 (-)
AMCG00007374 abtb2b,abtb2,LOC107558307,LOC107675288 coding downstream 548802 16385385 ~ 16444113 (-)
AMCG00007387 tspan18 coding upstream 56281 17049716 ~ 17058918 (-)
AMCG00007386 NA coding upstream 156737 17150172 ~ 17168177 (-)
AMCG00007388 NA coding upstream 193403 17186838 ~ 17190438 (-)
AMCG00007389 NA coding upstream 207425 17200860 ~ 17237726 (-)
AMCG00007393 NA coding upstream 333905 17327340 ~ 17348888 (-)
G23431 NA non-coding downstream 28648 16963967 ~ 16964267 (-)
G23429 NA non-coding downstream 44170 16948452 ~ 16948745 (-)
G23397 NA non-coding downstream 283735 16706289 ~ 16709180 (-)
G23379 NA non-coding downstream 330250 16660881 ~ 16662665 (-)
G23344 NA non-coding downstream 612624 16378518 ~ 16380291 (-)
G23440 NA non-coding upstream 16354 17009789 ~ 17010047 (-)
G23441 NA non-coding upstream 21903 17015338 ~ 17015671 (-)
G23442 NA non-coding upstream 22587 17016022 ~ 17016266 (-)
G23447 NA non-coding upstream 37950 17031385 ~ 17031682 (-)
G23448 NA non-coding upstream 39493 17032928 ~ 17038985 (-)
AMCG00007375 NA other downstream 371010 16469467 ~ 16621905 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 647335 16320997 ~ 16345580 (-)
AMCG00007366 NA other downstream 678883 16237461 ~ 16314032 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 2959703 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 3046850 13945643 ~ 13946065 (-)
G23661 NA other upstream 1062035 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 1209024 18202459 ~ 18208020 (-)
G23838 NA other upstream 1782925 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 2798266 19791701 ~ 19799752 (-)
AMCG00007487 NA other upstream 2921711 19915146 ~ 19923153 (-)

Expression


Co-expression Network