AMCG00007374 (abtb2b,abtb2,LOC107558307,LOC107675288)


Basic Information

Item Value
gene id AMCG00007374
gene name abtb2b,abtb2,LOC107558307,LOC107675288
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 16385385 ~ 16444113 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007374
ATGGCAGGGATGTACAGCTCGACTCTGAAGACTTTGGAGGACTTGACTCTGGACTCGGGCTATGGCGCAGGTGACTCCTGTAAGTCCCTGAGCCTCTCTTCCTCCAAATCCAACTCGCAGGCGTTCATGAGCGCTCCGCACCGGGGCAACTGGTGGTACTATTCCGGATCTATGAACAGCAGGAATAACAGCTGGGACACGGTCAATACGGTCCTGCCAGAAGACCCCGAAGACATATTCTCCAAATGTCCCCGTCTCCCGGAGCTGGAAGAATTCCCCTGGACCGACGAGGACGTTGGCAAGGTATTGCGCAAAGGAGCCGGCAAGGGAGCCACATTTTCCCAGGACGCTGTCCGGAGGCTCTCCACGCTTCTACGGAGGGCTCTGATCCGGATCTCCAGAGAAGCCCAGAGGCTCAGTGTCATGCACTGCCGGTGTACCCGCTTTGAGGTGCAGAGCGCCATCCGCCTGGTGCTGAGCTGGGCGCTGTCCGAGAGCTGCGTGTCGGCCACGGTCAAGGCCATCTCCTTGTACAGCATGAGCGCAGGTGAGTGGCTGCGGAAGGGCAAGTCCTCCCGGTGCGGGCTCACCTTCCCCGTCGGCCGCTTCTTCCGCTGGATGGTGGACACACGCATCTCCGTGCGCATCCACGAGTACGCGGCCATCTGCCTGACCGCCTGCATGGAGGGGCTGGTGGAGGAGGTCGGCTCCCGTGTGTGGATGGCGGAGAGGCAGCATGGTCCAGATGCAGCGGCGCCCGGCGCTGGAGTCACGGCAGAAACTCTGGAGAGCGTCATAAACAACGACGCCGAGCTCTGGGGGGTTCTGCAACCTTATGAGCATCTCATCTGCGGAAAGAACGCCAATGATGGAGCGGGCGGCACACTCGCAGGCAGCCGTGCCCGCTTGGGTCAGGCGCTTTCCCGGTgcgggagggagagagggctcCGTCAGCTGTTGCGGTTCCCCCAGCACACCGACGTGCGTCAGACCTCGGTCGTCCCAAGCCACGAGCTGCAGCCCAGCGCCAAGGAATCTGGGATTGCACTGGAACGCACTGAGACTCGACACCGTGTGCTGTCCCTGCCCGCCCACTTCAGCCCGTACACAGAAGGCTCGTCCAGTCTGGAAAGCCGGGAAGACGCCTACGCCCAGCTGGAGCTGCGTACCCTGGAGCAGTCCCTCCTCGCCACCTGTGTGGGCAGCATCTCCGAGCTCAGTGACCTGGTCTCCAGGGCGATGCACCACATGCAGCGCCTGAGCGCAGTGAGGCCAGGCCTGAGCCCTGCGCGCTACAGCCGTCAGCAGCCCGTGTCCTGGTCCCCAGATGCCCTGCATACCCTCTACTACTTCCTGCGCTGTCCGCAAATGGAGTCAATGGAAAACCCCAACCTAGACCCACCCAGAATGGCCCTCAGCAAGGAGAGGCCCTTTCTCCTGCTGCCCCCTCTGATGGAATGGATGAGAGTGGCCATTGTTCACGCTGAGCACCGTCGCAGCCTATTGGTTGACAGCGATGATGTCAGACAGACAGCCAGGCAGCTCCTCCCAGGGCTGGACTGCGAGCCCCGGCAGCTCAAgcCAGAGTGCTGTTTTAGCTCTTTCAGGCGTCTGGATGCCAAGGCGGCCACAGACAAGTTCCAGCTGGACCTGGGATTCCGAATGCTGAACTGCGGCCGGACAGACTTGATCAGCCAGGCCATCGAGCTGCTGGGCCCTGATGGGGTCAACACCATGGATGACCAGGGTATGACTCCCCTGATGTATGCCTGTTCGGCGGGAGATGAAGCTCTGGTCCAGATGCTGATAGACGCTGGCGCCAACCTGGATATAGCGGTCCCAGGCTACTCCCTCAAACACCCATCGGTTCACCCTGACAGCCGACACTGGGCAGCCCTGACCTTCGCAGTACTTCACAGTCACATCTCTGTAGTCCAGCTTCTGCTGGATGCCGGGGCCAATGTGGAGGGCGCAGCAATCACCAATGGAGAGGAGAGCAATGCCGAGACTCCCCTCCAGCTGGCCTCCGCAGCAGGTAACTACGAGATGGTGAGCCTGCTCTTAGCCCGGGGGGCCGACCCCCTCCTGAGAACACACGATGCCAACGGACTGACGTCATCCCTCTACGAGGACATGAACTGCTTCAGTCACGCGGCAGCACACGGGCACAGGAACGTGCTGAGGAAGCTGCTGGCTCAGCCCCAGCAAGTGAAGGAGGATGTTCTGTCTCTGGAGGAGATTCTGGCGGAGGGTGTGGAGGGGCAGCCCCCAGTGTGCCGCCCACTCAGCCCAAATGGGGGGCAGCTGAAGCTCTGTAAAGCCCGTATGAAAGCCCTGCAAGAGGCCACCTACTACAGCTCAGCACATGGCTACCTGGACGTCACCATGGAGCTACGGTCTCTGGGTGTGCCCTGGAAACTCCACGTGTGGCTGGAGTCCCTGCGGAGCTCCCAACAGCAATCCCGGGCCTCAGTTACCCTCACTCTCCTGCGCGAGTTCTCCACTATCAGAGAGGAAGACTACTGCGAGGAGCTGGTTAACCAAGGCCTACCGCTGATGTTCACCATCCTGAGAACAAGCAAGAATGATGCCATTAACCAGCAGCTGGCATCCATCTTCAGTCATTGCTATGGAAGCAGTCCCCTGCCAACAATCCCAGAAGTCAAGATAACTCTCCCAGCACAATTAGACCCCCATTTCCTGAACAACAAAGAAATGTCAGATGTGACCTTCCTGATTGAGGGGAGACCCTTTTACGCTCACAAGGTGCTCCTGATGACGGCATCTGAGAGGTACTTCATGAGTTCACCTGGCTCTGAGGAAAGCCAGGACTGCAGGAACATAGAGATCAACGAGGTCAAGTACAAGATATTTGAGATGATGATGACTTACCTATACTGTGGGAACACAGAAGCAGTGCGGGTCCCCGTGAGCGATGTGCTTGAGCTCCTGTCTGCAGCCAGCCTCTTCCAGCTGGCAGAGCTGCAGAGACACTGTGAGATCATCTGCACTAAGAGCATCACCCCGGAGAGCGCTGTCAACATTTACCGCACTGCCAAGGTGCATGGCGCCGCAGAGCTTACCGCGTTTTGTGAAGGATACTTCCTGCAGCACATGGTGGACCTTCTGGATCAAGAGGTATTCCGGGGACTGGTGTTGGGTCTGGGGTCCAACAGCCGACACAGCTGGGAGCCCTTGGACGACCTTGAGGCCACACTGGCTAGGAGGATGCGCTCAATGTATGTCACCTCCAGAGTGTGA

Function

symbol description
abtb2b Predicted to enable protein heterodimerization activity. Orthologous to human ABTB2 (ankyrin repeat and BTB domain containing 2).
abtb2 Predicted to enable protein heterodimerization activity. Predicted to act upstream of or within cellular response to toxic substance.

NR:

description
ankyrin repeat and BTB/POZ domain-containing protein 2

GO: NA

KEGG:

id description
K10521 ABTB2; ankyrin repeat and BTB/POZ domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007374 True 3261 mRNA 0.59 18 16385385 16444113

Neighbor

gene id symbol gene type direction distance location
AMCG00007364 phlda2,LOC100705395 coding downstream 115008 16269967 ~ 16270377 (-)
AMCG00007362 ptpn5 coding downstream 396762 15979313 ~ 15988623 (-)
AMCG00007363 LOC108428835 coding downstream 446855 15934147 ~ 15938530 (-)
AMCG00007361 NA coding downstream 495020 15874967 ~ 15890365 (-)
AMCG00007358 mob2,LOC102782240,LOC108411394,LOC106561048 coding downstream 609873 15756293 ~ 15775512 (-)
AMCG00007373 b4galnt4 coding upstream 11420 16455533 ~ 16467687 (-)
AMCG00007376 tmem86a,LOC107707555,LOC107675270,LOC107709947,LOC107688565 coding upstream 221438 16665551 ~ 16670635 (-)
AMCG00007380 LOC103466153,LOC107104254,LOC106927356,LOC106962050,LOC101067251,LOC102221597,LOC107389017 coding upstream 267979 16712092 ~ 16732845 (-)
AMCG00007384 NA coding upstream 527189 16971302 ~ 16978773 (-)
AMCG00007387 tspan18 coding upstream 605603 17049716 ~ 17058918 (-)
G23344 NA non-coding downstream 5094 16378518 ~ 16380291 (-)
G23250 NA non-coding downstream 315921 16068083 ~ 16069464 (-)
G23225 LOC103376870 non-coding downstream 584433 15734625 ~ 15800952 (-)
G23105 NA non-coding downstream 1253787 15131388 ~ 15131598 (-)
G23101 LOC101154678 non-coding downstream 1360640 15024241 ~ 15024745 (-)
G23379 NA non-coding upstream 216768 16660881 ~ 16662665 (-)
G23397 NA non-coding upstream 262176 16706289 ~ 16709180 (-)
G23429 NA non-coding upstream 504339 16948452 ~ 16948745 (-)
G23431 NA non-coding upstream 519854 16963967 ~ 16964267 (-)
G23439 LOC106560706,LOC103380370,LOC107104255,LOC105904524 non-coding upstream 548802 16992915 ~ 16993435 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other downstream 39805 16320997 ~ 16345580 (-)
AMCG00007366 NA other downstream 71353 16237461 ~ 16314032 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 2352173 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 2439320 13945643 ~ 13946065 (-)
G22838 NA other downstream 3033312 13351517 ~ 13352073 (-)
AMCG00007375 NA other upstream 25354 16469467 ~ 16621905 (-)
G23661 NA other upstream 1611357 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 1758346 18202459 ~ 18208020 (-)
G23838 NA other upstream 2332247 18776360 ~ 18777638 (-)
AMCG00007481 fam63b,LOC107750498 other upstream 3347588 19791701 ~ 19799752 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000330_00698127_00755584 ABTB2B, ABTB2 coding CI01000330 null 698127 ~ 755584 (+)