CI01000330_00698127_00755584 (ABTB2B, ABTB2)


Basic Information

Item Value
gene id CI01000330_00698127_00755584
gene name ABTB2B, ABTB2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000330
NCBI id null
chromosome length 4651236
location 698127 ~ 755584 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000330_00698127_00755584.mRNA
ATGGCAGGAACAAACAGCTCAAACATGAAAACTCTGGAGGATTTAACTCTGGACTCTGGTTATGGAGCAGGGGACTCGTGCAAGTCCTTAAGCCTGTCGTCGTCCAAGTCAAACTCGCAGGCGTTCATGAACACCCCTCACCGGGGGAACTGGTGGTACTACTCCGGATCCATGAACAGCAGAAACAACAGTTGGGATACAGTCAACACAGTGCTTCCCGAGGATCCAGAGGACAGTTTCTCTAAGTGCCCACGCTTACCGGAGCTGGAGGAGTTCCCGTGGACGGAGGAGGATGTGGGGAGGGTCGTGCGTAAAGGTGCGGGGAAGGGCGCCTCGCTCTCCGCGGAGGCTGTGCGCAGACTAGCCACCCTGATGCGCAGAGCGCTCATCCGCATCTCCAGAGAGGCGCAGCGGCTCAGTGTCATGCACTGCAGATGCACCAGGTTCGAGGTCCAAAGCGCGATCCGCCTGGTGCTCAGTTGGGCGCTGGCGGATCACTGCGTCTCGGCCACTGTGAAGGCCATATCTATGTACAACATGAGCGCTGGAGAGCTCTTGCGCAAGGGAAAGTCAGCCCGATGTGGGCTTGTGTTCTCCGTGGGACGGTTTTTTCGCTGGATGGTGGACACTCGGATCGCGGTGCGCATCCACGAGTACGCGGCCATCTGCCTGACCGCGTGTATGGAGGCGCTCGTGGAGGAGGTGGGAGTGCGCGTGCTGATGGCAGAGAGGGAAGGCGCGACACCCGGCTGCGTCCTGACAGCAGAGGCGCTGGAGGGGGTCATCAATAATGATGCCGAGCTATGGGGTGTCCTACAACACTATGAGCATCTCATCTGTGGGAAGAACGCCAATGGTGTTCTGTCACTTCCGGCTCATTTCAGTCCATACACAGAGGGATGTCAGACGGGATTGGAGAGCAGAGAGGATGCGTACGCTGAACTGGAGCTGCGGACACTCGAGCAGGCCTTACTGGCTACATGTGTGGGCAGCATTTCAGAACTGAGTGACCTGGTGTCACGGGCCATGCACCATATGCAGCGCCTCAGTTCTGTCCGTCACGGGCTCAGTCCGGCACGACATGCCCGCCAGCAGCAAGTCTCCTGGTCTCCGGACGCCCTCCACACTCTCTACTACTTCCTGCGATGCCCTCAGATGGAGTCCATGGAGAACCCCAACCTGGATCCGCCCAGGATGGCCCTGAGCAAAGAAAGGCCGTTCCTCCTCCTCCCTCCGCTGATGGAGTGGATGCGTGTGGCCATCGTTCACGCGGAGCATCGCCGCAGCTTATTGGTGGACAGCGATGATGTCAGACAGACAGCACGGCTACTCCTGCCTGGGCTAGACTGTGAGCCTAGACTGCTAAAGCCTGAGTGCTGTTTTAGTTCCTTCAGGCGGCTGGATGCCAAAGCCGCTACAGATAAGTTCCAGCTGGACCTGGGCTTTCGCATGCTCAACTGCGGCCGCACCGATCTGATTGGCCAGGCCATCGAGCTGCTGGGGCCAGATGGTGTCAACAGCATGGATGACCAGGGTATGACCCCGCTGATGTACGCCTGCTCAGCTGGAGACGAAGCTTTAGTCCAGATGCTGATTGATGCTGGAGCCAATCTGGATGTAGCAGTACCCGTTTGCTCTCCCAAACATCCTTCAGTCCACCAAGACAGCCGCCACTGGGTGGCGCTCACATTCGCTGTGTTACATGGACATATATCAGTAGTGCAGCTTCTATTAGATGCCGGGGCAAATGTGGAAGGAGCAGCCGTCCGTAACGGACAGGAGAGCAATGTCGAGACGCCTCTCCAGCTGGCATCTGCAGCAGGGAATTACGAGATGGTTAGTTTACTGCTGGCGCGGGGTGCAGATCCCCTGCTGAGGTCCCAGGACGGTAACACACTGACATCATCGCTCTATGAGGACATGAACTGCTTCAGTCATGCTGCCGCCCATGGCCATAGGAATGTTTTAAGGAAGCTCCTCTCTCAGCCTCAGAAGGTGAGGGAAGATGTGCTTTCGCTGGAGGAGATCCTGGCAGAGGGTGTGGAGGGCGAGACGCGGGCGTCTGGCCGGAACGGACATTCTCTACCCCCTCCTCCATCCCCTAACCTCAGCCTGGTGTCAGAAGATGCCCTGCCCAAGCTGTGTAAGGCCCGTATGAAAGCTCTGCAGGAGGCGTCATTCTACAGTGCAGAGCACGGTTACCTGGATGTCACCATGGAGCTCAGATCACTGGGAGTGCCGTGGAAGCTTCATGTATGGTTGGAGTCACTGCGCAGTGCTCAGCAAAAGTCCAGAGCTGGAGTCACGCTCTCCCTTTTGCGTGACTTCACTTCCATCAGAGAGGAGGACTACTGTGAGGAACTGGTCTGCGTTGGTTTTCCTCTGATGTTTAACATCCTGAAAAATAGCAAGAACGAGGCAATACTCCAACAGCTGGGCATCATTTTTAGTCACTGTTATGGTCCTGCTCCACTTCCTCCTATCCAGGAAAAGAAGGCTGCGCTCTCCGCTCAACTTGACCCTCACTTCCTGAACAACCCAGAGATGTCTGACGTGACGTTCCTAGTGGAGGGCAAACCTTTCTATGCTCACGGGGTTCTGCTGCTCACAGCGTCCGATAGGTTCAAAACTCTGTTGGCACTGAACGGGTCGGACAGCACTCATCCACGCAAAGACATTGAGATCAGTAACGTCAAGTACAACATCTTCCAGATGATGATGTCATACCTGTACTGCGGGGGGACAGAGTCTCTGAAGATGGGCGTCTCAAAGTTACTGGAGTTACTGTCAGCAGCCAGTTTGTTCCAGCTGGGGGCGCTACAGAGGCACTGTGAAATTCTCTGCGCTCAGAGCATTGACCTTGACAATGCTGTGAACATCTACCAAACTGCTAAGGCTCATGGTGCGGTGGAGCTCTGTACATACTGTGAAGGTTTCTTCCTGCAGAACATGGCAGGTCTATTGGAGAGGGAAGCCTTCCGGGCGCTGATCCTGGGGTCCGGGACACGAAGCGGGTCTGGAAAAGACTCTCTTCTGGAAGAGCTTGAGGCAACGTTAACACGCAGACTACGCTCACTGCTAGTGACTTCTCGTGTG

Function

symbol description
abtb2b Predicted to enable protein heterodimerization activity. Orthologous to human ABTB2 (ankyrin repeat and BTB domain containing 2).
abtb2 Predicted to enable protein heterodimerization activity. Predicted to act upstream of or within cellular response to toxic substance.

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10521 ABTB2; ankyrin repeat and BTB/POZ domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000330_00698127_00755584.mRNA True 3096 mRNA 0.56 17 698127 755584

Neighbor

gene id symbol gene type direction distance location
CI01000330_00514166_00689989 B4GALNT4A coding upstream 7799 514166 ~ 690328 (+)
CI01000330_00483566_00485212 MGC80058, TMEM86A, TMEM86A.L coding upstream 211697 483566 ~ 486430 (+)
CI01000330_00432956_00445829 NA coding upstream 251536 432956 ~ 446591 (+)
CI01000330_00346321_00365907 NA coding upstream 331945 346260 ~ 366182 (+)
CI01000330_00303555_00322321 NA coding upstream 375539 303226 ~ 322588 (+)
CI01000330_01043094_01051071 LDH-A, LDHA coding downstream 287510 1043094 ~ 1051071 (+)
CI01000330_01112605_01119220 NA coding downstream 357021 1112605 ~ 1120106 (+)
CI01000330_01162093_01168098 RASSF7A coding downstream 406509 1162093 ~ 1168325 (+)
CI01000330_01180674_01200580 PHRF1 coding downstream 425090 1180674 ~ 1200921 (+)
CI01000330_01225611_01226156 ASCL2, ASCL1, ASCL1B coding downstream 469661 1225245 ~ 1226920 (+)
G473440 NA non-coding upstream 48668 637996 ~ 649459 (+)
G473441 NA non-coding upstream 155480 533307 ~ 542647 (+)
G473443 NA non-coding upstream 166524 501369 ~ 531603 (+)
G473495 NA non-coding upstream 319420 363033 ~ 378707 (+)
G473444 NA non-coding upstream 326924 334908 ~ 371203 (+)
G473545 NA non-coding downstream 3283 758867 ~ 759225 (+)
G473546 NA non-coding downstream 4060 759644 ~ 759968 (+)
G473662 NA non-coding downstream 306176 1061760 ~ 1067201 (+)
G473648 NA non-coding downstream 458106 1213690 ~ 1217964 (+)
G473711 NA non-coding downstream 483485 1239069 ~ 1239334 (+)
CI01000330_02046876_02054740 NA other downstream 1291197 2046781 ~ 2054740 (+)
G474750 NA other downstream 1638573 2394157 ~ 2399678 (+)
G474771 NA other downstream 1744518 2500102 ~ 2510170 (+)
G474777 NA other downstream 1755872 2511456 ~ 2514764 (+)
G474807 NA other downstream 1839462 2595046 ~ 2598105 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_024130 abtb2b coding NC_007136.7 CM002909.2 24616717 ~ 24723873 (+)
bowfin (Amia calva) AMCG00007374 abtb2b,abtb2,LOC107558307,LOC107675288 coding CM030123.1 CM030123.1 16385385 ~ 16444113 (-)