CI01000330_01180674_01200580 (PHRF1)


Basic Information

Item Value
gene id CI01000330_01180674_01200580
gene name PHRF1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000330
NCBI id null
chromosome length 4651236
location 1180674 ~ 1200921 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000330_01180674_01200580.mRNA
ATGGATGAGGAGGACAGCCAGGATGAGCTGATCAACAGGAATGTCTCCCATGGAAAAGGAAAAAGACCTGCCATGCCCATCATCTCTGATGACGATGAGGACTCTGGCAACGTCCTGGAAGGAGCTACAGGGAATGTTCCTGTGGATGCAGCAGGCCTGAGCTCAGATGAGGACTCTGAGAAATGTCCCATCTGCCTGAACTCATTCCACGAGCAGCCCGTGGCCACACCGGAGTCTTGCGAACACTACTTCTGCCTGGACTGCATTCTGGAATGGTCAAAGAATGCCAACTCCTGTCCTGTGGACCGAATAGTCTTTAATAACATTCTCCTGAGAAAGTGCCATGGTGGGAAAGTTCAAAAAGCAATTGCAGTTAAGAAGCCTGTAAAACCTGGGGAGGAACAGGTGAATGTGGACCTGGATCAGACCAGCTGTGAGGTTTGCGGGGGTCGAGACCGTGAAGATCGCCTCCTGCTGTGTGATGGCTGTGATGCTGGGTACCACATGGAATGTCTCACACCGCCTTTGGATGCTGTACCTGTAGAGGAATGGTTCTGCCCAGAGTGCATCGCCAGCAACCGCACATCAGGTTCTGAACAAATTAGTGAGGAGGAGAGCAGCTCTCTCCCCACCACCAGCCGTTCCCGGTCAAGACCAACCCGAGCTATCGCACGGACCCAGCAGAGTGAACGAGTTCGGGCCAACGTCAACAGACATCGTATCACACAGGCACGCACAGCAGCACAGCTTGCTCCCAGATATATGATGCAGTCCACATGGTTGGATGAGACCATCAATGCTGTAGTGGCCGGACTCAACACAGCCGTGTATGTGCGAGACTTGACCCCTCGCCCCAGACCCCGCCGGAGGAGAAAGACAGTTAAAAGAAGGAAAACCAAAAGCAAATCCTCGGCAATCTCAGAGGGGAAAACAACAAAAAGCATGGGAGTGAGGAGGAGACGGAAACGCAAAGTGAGGAAGTCAAAATTAAGAAGAAAACTGGTCAAAAAGAAGGAAACTAATTCCAGAGGTCGTATTGCAAGGAATTTAGGGATTAAGAAGCCCAAGCCTGGTTCCATCATTCCCTCAGTTTATAGGCCTTCAGAGTACAGTTTAGGAAGTATGCGGGCAGAAATTGGTGCAGCCTCCCTCTCTGTTTACGGAGATCCCTTTGACCTAGACCCCTTTGACGATAGGGAGGATGAGATTCAAGTTCCAACACCATCCTCTGTTCTGGATGCCAAACGCCGTGGCCTCTCCCGTTCTGCCTTGCGGTCCCATCAGCCTGTGGCTAGACCCATATCTGCCGGCCTCTCCAGGCAAGGTGTGAGTATCCCACAGGTGGAAGCCCCTGTACCAGACCTGCTGGGGAGTATTCTCAGTGGTCAGAGCATGCTCCTCATGGACAGCTCTGATGTGGTCATCAACAGAGATGGTTCCCTCAAAGCAACCAAACCTGTGTCCCTGTCCTTGCCAAGGAACACTACCCCTAGAGAATCAAGCTCAGGGGAAACGGCAAACACGCCAAACTCAGAAACAAGTCCCATCCACCCCTTTGAACAGGCTGGTCCTTCCTCTAGCCCGTTGAGGAGGCCCACACCAGTACACAATTCTCATGGGTCCTGTTCCACACCACAGAATCCCACATCTCCACCCATACACTCTCCACATCTTCCTCACTCTCACCCATCTCCTTTGGGACATCCCCATCTGCATCCAGGTGCTCTTCACAGGCCCATCACCCTAAATCCACCAAGACCTGGAAATGGTCACTTGAGCACTAATGGGATTAGAGGTCAACCCCCCTCAAGGGTGTCAAATAGCCCTTCTGACTCTCCCCATCAAGACAAGGAGGGTACTCCCCGACAACCGCCTGTGAGAAAGCCCCCTCCAAAGCCTGTATGGGTGGATGTTTCTGTATTGCCAAGGATACCAAAAATTAAAAGGGACAGTACCTCCAGTGCAAATAGTAGCAGTGACAGCAGTAACAGTACTTTGCCTGGGTCTTCAGCGACCAGCTTAGCAGGCAATACAGGTAGGGAACGTACCGTTGACCAGCAAGGAATGGGTACAAGTCAGCAAAACAGGACAGCGGATGCTCAGAGGCAAAGAGCAGACCGAACTGGTGCTTCTTCATTTTCTAGCTCTTTCACCTCCACTACATCTTCTTTCAGTGCCTCTGCAAACTCACGCCCGTCCTCCTCCTCCGTCAGTTTCCGTATAAACTCTAGCGGAAACCCATGGCAAGCTCGGCGACTTCCTGCATCAGGAGGGACTCTGACTGGGAATGATGAGGAATCATTAAAAAAGAGTAATAAAAGTAAACAGATACTGTTGTCATTAAGAAGAAAAGTCAAAGAGGAGAAGTGTGAGGTCTATGACCCCTTTAACCCTACAGGGTCTGATTCATCTGATAATGAACCAGAAGGTGAGGGTCTTGATGCTAGCACTCAAAATACTGAGTCTCGGGTGGCAGTTGGAGTCAATGAGGTTGCCTGTCATCAAATCAAGTCTGAGCCTTTGAGTGAGGACTCCGATATGGAGAGAGACTTGGAAATGTGTGCAGAAATTAAAACAGAACCAGATCCTTGCAGAGACAAACCGTGCAAACAATCACCACATCATTCAGATGCAATCGACAGTCAGGCTACCTCAGGAGCTTCTATAAATTCTACTATATGCGAAGCTAGCATAGATCCTGAAAGTCGTGAAACACCAGAAAGTCCGTTTCGGAAAACTCAGGAGCACTCCAGATCGAGCTCGTCATGCAGTGACAGAAACGTTAAGTTGGAGGTGAAGTCTGAGCCTGAGGCTGAACCTCCTGTCAGGCTCCAATCAAAGTCCCTTGAAGAGTCTCTAGCAAATCTACAACAAACTTCCAAAGGAAATGGGGTGTGTAAAGAGCTACCTTCAGTCAGTGGTGCCTTTAACGCTACTAACATAACGGAAAGACCTCACAAGTCCCAGTGCAAGGATAGGAAGCGGTCACCATCAACCTCGCAAAGCCTTTCATCTAAAGACTCCCATAAAAAGAAGCACTCAAGGTCAAAAGAAAAGAGGAGGTCACGCTCAAGATCAAGAGACCGGCGGCGATCCCGTTCAAAATCAAAAGAGAGGCGGCGCTCAAGATCGAAAGAGAGGAGACGTCCACGGTCAAGAGACAGGAGGTGTTCCTCGAGTTCCAGCAGTAGAGAGAGGAAGACAAGTGGGAGAAGAGTGAGTCGTGAGAGGAATGACAACCGAGGGAGAGAAAGACGAAAGAAGAGATCAAAAGAAAGAAGGCGATCTCGTTCGTTCTCTAGATCTAGATCCAGAGAAAGGAGGAGAACATCAAAGGATAGGGGTGAGAATAGGTTAAAGAGACAAAAGTCAAGATCAAGATCAGCGTCTAGAGAGCGGAAAAGGCGAGATGATCGATCAGAGACCTCTCGGCGTACAGAAAGGTGCTCCCATAAGTCTGCAGAGCCCATGTCTACTGAGTTACATGAGCCAGCTGTTGGTTCAGTCAAGTCTACAACGACGATGAAGACCGAGAAAGAGGCGAGAGCACATGAATATGAGACTGCTTCACTTAAACCATCAATTAAACAAGAGACTCTGTTGGTTGACATCACAACTTATGGTCTTGGGTCATCAAGACATGGTGACCAGACTAGAGCAGTTAAAGAAAGCAAGGAAGATGTTTCACATGAGCTGCTTAAGCCCAAGAAATTGAAACAAGAGGAACCTCGGCCCATTAGTGCTGTCAAGGAGTTGAAAGATTTCAAAAAGGAGGAGGAAGTCGGTCTTAACTTGCATGGAGAATTAGATGGTGACATCACAACTCCTGGTCTTGAGTCGTCAAAACATGGAGACCAGTCTAGAACAGTTAAAGAAAGCAAGGAAAATGTTTCACATGAGCTGCTTAAGCCCAAGAAATTGAAACAAGAGGAACCTCGGCCCATTAGTGCTGTCAAGGAGTTGGAAGATTTGAAAAAGGAGGAGGAAGTCGGTCTTAACTTGCATGGAGAATTAGATGGTGACATCACAACTCCTGGTCTTGGGTCATCAAAACAAGGTGACCAGACTAGAACAGTTAAAGAAAGCAAGGAAGATGTTTTGCTTGAGCTGCTTAAGCCCAAACAGTTTAAACAAGAGGAACCTTGGCCCATTAGTGCTGTCAAGGAGTTGAAAGATTTCAAAAAGGAGGTGGAAGTCAGTCTTAACTGTGGAGAATTTTATAGTGTTAAAGAGATGAAAAATGAAGAGATGATGTCTTTAAACATCTTCAGCAAGGAATCACCAAATCTTAATGAAATAAATTTGAACAGTGCTGATTTAGAAAAGAGCCACGCTGGCTTTCAGGATGAAATGAAATTACAAGAAATTGTTGAGCCAAAAAAGGAAAAAATCGAACAAATATGGCCTGATGAAGATGATTCACCAAGCTGCAGTGACAACCCTCTTGTCATCAGTTTGGATACACCTGACATAGATGCCGTGAACTGTAAAAAGGAGCCCACTGAGTCATATCAGTCACCACTTTTACAGGAGGACATTGAGTTGTCCCCTCTCCAACCACCAGACCCCCCAATAAAACAAGAACCTGTTATGTCGTCCGATGAAGATATTAGCGTTGACTACTTGATTGATAATTTGGACTTCATTAAGAAAGAAATGAGTGAGAGCTCTGTGGCCGACTCAGCAGAAGACCCCAAGTCCACCACTTCAGAGCCTCCAACAGGGAATAAGCAAACTACTGAAACAGTTACAGCTGGTGCGAAGTCTAAACCACAGGGGAAGCGAGTTACTTGGAATTTGCAGGAACCAGTAGAACCCCAGTCTGAGAAATTAAGCAAACTTGCACTCTTCAAACTAAAACTCAAGCAAGAAGGGTCGCGAAGGTCTGCTACATCCCAACAAACCTCCAGTCAGGATAAAGCTTCATCTAAGGCTGATACAAAACTCACAGCAACAGTCTCCAGCCTTCCTCCCCAAGATGAATCCAGCAAACCAAAATCCCACAAAGAAGCTTTACAGGACCCCAATCAGAAAGATAAGTACATGAAGAAACTTCATATGCAAGAGCGAGCAATAGAGGAGGTCAAACTTGCAATAAAGCCCTTTTATCAGAAAAGAGATATCACAAAGGAAGAGTACAAAGAGATTTTGCGTAAAGCCGTTCAGAAGGTGTGTCATAGCAAGAGCGGTGAGATCAACCCAGTGAAGGTAGTTAACCTGGTCAAAGCCTACGTGGATAAGTATAAACATGCAAGAAAACACAAGAAAGATGAAACTGGACAAAGTCAAAATGCAGACGTCCCGAAAGACTTCCAAACTTCATTGTGAGGTCATGCATCCTTTTCAGACCGTATCATTAGCAATCAACTGTAGATTTGATTATTTTTTAATCTGCGCATTTCTACAACGACAAAGAAAACTCAAAGGGCTCAAATGTCTTGTTATCAGTAATCAAATGAACAGTTTTGAATGTTTGTATGTTTTCTTTTTAATGTAAAGATCATTTGAAAATATCTGGGTGTGTCCGAATACAAGATATGTTAAAAATCTTTACGTTGCCATTGTTTAAAACGAGTCTTCATGAGGGTGTTGTGTTTCTTTGCTATTTTAAGCTTATTCAACAGGAAGTGTAAGTTGCTAGACAGGCTCTTGCACTGTCAGACTGAAAT

Function

symbol description
phrf1 Predicted to enable metal ion binding activity. Orthologous to human PHRF1 (PHD and ring finger domains 1).

NR:

description
Zgc:172184 protein, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000330_01180674_01200580.mRNA True 5669 mRNA 0.46 16 1180674 1200921

Neighbor

gene id symbol gene type direction distance location
CI01000330_01162093_01168098 RASSF7A coding upstream 12349 1162093 ~ 1168325 (+)
CI01000330_01112605_01119220 NA coding upstream 60568 1112605 ~ 1120106 (+)
CI01000330_01043094_01051071 LDH-A, LDHA coding upstream 129603 1043094 ~ 1051071 (+)
CI01000330_00698127_00755584 ABTB2B, ABTB2 coding upstream 425090 698127 ~ 755584 (+)
CI01000330_00514166_00689989 B4GALNT4A coding upstream 490346 514166 ~ 690328 (+)
CI01000330_01225611_01226156 ASCL2, ASCL1, ASCL1B coding downstream 24324 1225245 ~ 1226920 (+)
CI01000330_01348143_01348817 NA coding downstream 146897 1347818 ~ 1348817 (+)
CI01000330_01364642_01375705 HEXA coding downstream 162457 1363378 ~ 1376127 (+)
CI01000330_01388435_01391261 NR2E3 coding downstream 185771 1386692 ~ 1391601 (+)
CI01000330_01392662_01401121 NA coding downstream 191741 1392662 ~ 1401430 (+)
G473662 NA non-coding upstream 113473 1061760 ~ 1067201 (+)
G473546 NA non-coding upstream 420706 759644 ~ 759968 (+)
G473545 NA non-coding upstream 421449 758867 ~ 759225 (+)
G473440 NA non-coding upstream 531215 637996 ~ 649459 (+)
G473441 NA non-coding upstream 638027 533307 ~ 542647 (+)
G473648 NA non-coding downstream 12769 1213690 ~ 1217964 (+)
G473711 NA non-coding downstream 38148 1239069 ~ 1239334 (+)
G473713 NA non-coding downstream 40456 1241377 ~ 1241703 (+)
G473738 NA non-coding downstream 77428 1278349 ~ 1278639 (+)
G473739 NA non-coding downstream 88805 1289726 ~ 1290008 (+)
CI01000330_02046876_02054740 NA other downstream 845860 2046781 ~ 2054740 (+)
G474750 NA other downstream 1193236 2394157 ~ 2399678 (+)
G474771 NA other downstream 1299181 2500102 ~ 2510170 (+)
G474777 NA other downstream 1310535 2511456 ~ 2514764 (+)
G474807 NA other downstream 1394125 2595046 ~ 2598105 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00007346 phrf1 coding CM030123.1 CM030123.1 15189288 ~ 15210018 (-)