AMCG00007346 (phrf1)


Basic Information

Item Value
gene id AMCG00007346
gene name phrf1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 15189288 ~ 15210018 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00007346
TGTCACCGTGATTCGGGCCCGCTAGGCCGTTTCCGCCGCTGTCCGCAGCCGGCAGTGTCACTCAAGGCACAGACCGTGGACTTCAAAACAACCGAAATAAACCTCTCAGCCGCTGCGGCCATGGACGACGAAGACAGCCAGGATGAGCTGATCAACAGGAACGCATCACTCGGAAAAGGCAAAAGACAGAGTTTGTCTGTGCTCAGTGATGAAGAAGAGTACAGCGATGAAGAGGGAGAGGAATCTGAGGAAGAAGAGACGgacagtgaggaggaggagggggaggaagaggatgaTGACGGAGAAATCATTGACGAAGAGGAGGAAGACGATAGTGATGAGGCCGAAGACGACGATGCTGAGAAGCAGTTGGGAGGGACTCCTGGCGGGGCCGCCTCCAGCATGTTGGACCTCAGCTCAGATGAGGATTCGGAGAAATGCCCTATCTGTCTCAACACCTTCCAAGAGCAGGCTGTGGGAACTCCAGAGAACTGTGAACACTTTTTCTGTCTGGACTGCATCTTAGAGTGGTCCAATAATGCAAATTCCTGCCCTGTGGATCGCAAAGAGTACAACAACATCTGCCTAAGGTCTTGTTATGGAGGGACAATCCAAAAAAAGATCTCCGTACAGAAGCCCAATAAGaacaaggaggaggaggtggaggaccAGACCAACTGCGAGGTGTGTGGCAGGAGTGACCGAGAAGACCGGCTGCTCCTGTGTGACGGCTGTGACGCAGGGTACCATATGGAATGCCTCAACCCTCCATTGGACGCCGTTCCTGTTGAAGAGTGGTTTTGCCCCGAGTGCGTGGCAAATCAACCTGCTCGAGCGGCCTCGGCGGAGGAGGTGAGCGAGGAGGAGGTGGCGGCACTGATGGCCGACGCGGTGCCCACAACCAGCCGCCTGCGCAACACCACTGGGCCAACCCGCGCCATCGCCCGCACGCAGCAGAGTGAGAGAGTCCGCGCCAATGTCAATCGGAACCGCATCACACAGGCACGCACCATACAGCACGTACCCAGGTACTTGATGGAGTCCTCCTTGCTTGATGAAACGATTAACTCGGTAGTTGCAGGCCTGAGTACAGCAGTGTACATTCGGCCCCTAACACCTCGGACAGGAACCACTAGGAGACGGCGCATAGTAAGGCGAAGGAGAACAAAGAGTAAGAAGCCACGATCAAAAACCTCTGCTGGAGCAAAGTCTACAAGCACTGGGAAGGGGACTAGAAGACGCAAGCGCCGGTTTAAGAAGAGAAGATCAATGAAGAAACTAGTGAAAAAAGACCCAACGTCTCGTTCCCGTATTGCTAAGAACCTGGGAATTGGCAAGCCAGTCCGCGGCGTCTCCATACCGTCTGTGTATCGGCCTGTGGACCCTAGCCTGGGCAGCATGAGAGCAGATATCGGAGCTGCTTCTCTTTCAGTCTATGGAGATCCTTTTGACTTGGACCCCTTTGATGACGGTAGGAATGACAACACCGAGCGGTCTTCAAGCCCGATGTCCCTGGTTGAAGTTAAGAGAAAAGGACTCTCTCGGTCCGCTCTCCGATCCCACCAGCCCGTAGCAAGACCCATCTCAGTGGGGCTTCCCAGTATTCCTGAGGCTGAGGTTATTGCTGAGGCAGCACCTGTTCCAGACCTGCTGGGCAGCATCCTCTCAGGACAGAGCATCTTAATGATGGACAGTGCTGACGTTGTCATCAACAGAGATGGGTCTTTGAAAGCTATTAAACCAGTTGCCATATCATCCAAGACGAGCGTTTCTAGTGACTGTAATACACACTCGGCTACAGAGATTCATGCCGGGACTTCATCTTGCCCCCACACAAGTGCCTTTATCTTGAATGGAGACTTTgaatcatcatcaccatcatcatcatcatcttcatcttccCACACTGTTACTGCAAGACTCCCTTCACTCAACCCTTTGGGCCCAACTGTCTCCCACTCTTCGCCAGTAACTCTAAAGTCATCCAATCAGGTGCCATTATCTCTTGATGTGCGACCAACCACGTCTGGAGCCACTACAGTCAGGCCCCATCTCTCTGTGCTCCCTAGACCTAACGCACTAGCCAGCCTTGCAGGCAATAGCAGCAAAATTAGTGGCAGTACTGCATCCGTACCACATGTGCAGTTTTCAAAGAAGCGCACAGACAGCAACTCTGATTCACGCTTCAAAAGTGCCACAGCACCAGTTAAAAAGGCCCCTCCAAAACCAGTGTGGGTTGATGTGTCTGAACTCCCTAGGATACCAAAGATCAAAAGAGAGAACCCTTCTAACTCTTGTTCAAGTGACAGCAGAAACAGTGGAATACCAGATTCTTGCATGAATAGCCTAACAGGTAATGGGGGCAGGCAGCAGTCCAAAGATCATGGGACATTAAGAAGTGAGCAGAGTGGTGAAAGGCAGAGGCACTGCCATGGTGGCTCCTCTTCCACCTCTGGCTCCTCCATCACCTCGCCGACCGGTCCCAGTCCCTCAACTGTAAGCTTTCGCATAAGTGCCAGTGGAAATTCGTGGCATGCTAGGAGGCTTGCTCATGGTGGGGCTTTCAGTAACCCTTTAAAGTCCACTGATGACAAATCCTGGCAGAAATATGCTAAAGTCAAACAGACTTTGTCTTCACAGTCAAAGAAGAAGGAGGAACccataaaaagtgaaatatacgATCCTTTCGATCCCACCGGCTCCGATTCAAGTTCTTCTGAAAGCCCCTCAGATATATTTCAGTCCACAAACGTGGGCTCGGAAAGTGAATCCATGAGCCACTGTGTCCAGGATGCAGCGCGCAAAGAGCAAGAATCGCAGTCTTCTAGCTGGGATTGTTTTGAAGAGGATATAAAAGATGTTGGACACCACATTAATGTTGAAAAGCCGCTGCATTGTACTCAGGAAAAAGATGTAGAGGGAGGATCCAGTTTAGATGAACAGAAGGAATTAATTTGTACCAAGGACTTATTAGCTCATGGGGATAGTTTACAGAATACATGTAAAACTGAGAGCACAGTCGGTGAGCCTTTGTCTTCTGAAGAACAGGGCACTTCTACTAGTAAGAGAATTGATCTGTCAGAGAATGAATTGAACACACTACCTCAGAAGAATGCCTGTTCAAGATCCAGCTCAACATCCAGCTCTCACAGCGAGAAGAAAattaaagtggaaaaaaaattggAGCCCAAAGAAAGAACACAGAGGTCAGACTCTACATCAGGGTCAGGCTCCCGTTCTGCTACTGACAAGAAAGTGAGCTCTGCGGCGGGGGGGCGGAGGACTTCTGATGAGCATGGCCGGTCCAGCAGTTCAGAAGCCGCGAGGATGAAGGCGGCCAGAATTAAAAGCAGGGAGAAGAAGCCACCACGTTCCAGAtcgagagagaggaagaggtcTCGATCCCGTTCACGCAGCTCCTCGTCTGAGCTGTCTGAGCGATGGAAGAGGAAGAAAAGGCGGTCCAGATCGAAAGACAGGGGGCGGTCTCACTCCAGCAGCTTAGAAAGAGCCAAAAAGAAGAAACTGAAGAAGGAAAGAAGTCACGAAAGACATGAAAGCAAAGGCAGCATGCAGAGACCGAAGGACAAGAAGCATAGGCATTCTCGGTCTAGGTCCAGatccagagagaggaggaaagacCGATCAAGGTCACGATCAACATCGGGGTCAAAAGAGGTGGGCAACAGGTGGGGATCCAAAGAAAGAAGGAGACCAGGATCGAGATCCGGAtccagagaaaagaaaaacgaaGTTCATGGACAAACGTCCCAGTCTGTAGAAAAGAAAGGTGCAAAAGACTCTAAGAAACCAATAAAGCTTTCTATAGCATCTTTCAAAGACCATCAACAAGCAAAGGAAAAGTCTCCTCCAGTAGTGTCTGTGAAGGAGGAGCCTGGGAGTACAAACGCAGGCACCGAACCCGGCCTTAAAAacgggaggaaaaaaaatgatgagAAGATTACAGAGAGCAAAATGGATATCATTTTGGAGGCCAAGATTAAAACTGAGCCTACTTGGTTAGAAGAATCTTCATGTGAGGACCAGGTCTTGGTCACTGTAAAAGAGGAGGCTGTTTCTGCCATAGCCACTGTTGGGGAAAAACACTGTGAGTCTAAGCTAGCTGGTGCTTCTCCTGGGAATCCTCCCGGGGACGCTTTCCAGGAAACAGAATCTATTCTCAAAGTGGAAGACTCTGATGAAGAGATCAATGTAGACTACATTCTGGACAGCTTAGACTTAATAAAGAGTGAAGAACCAGAACCGACAAAGGTCAGTGAGAGTGCAGGGGATCTTAACAAATCTGTAAAGCAGGAAGATGCTCCAGTCAAACAGGAGGCCGAACCCTTTGCCGCCGTGACTGTCACCTCCAAATCCAAGGCCCCTGTGAAGAGAGTGACCTGGAAACTGCAGGAAGCAGATTTACCTTCATCAGGAAAGACTGGAGACGTTTCTTCATATAAACTGCAGCAAAGTAGCAAGGATGGATCCTGGAAGCCGAGGGATCCCATCCAAAATCAGGACTTCTCTCAATCTGCACCGCTGGTCGCTCTAGTCGGTGTGGGGTCTCCCTCTTACGGGCCAGTGAGTGAGCCCACTGCCCAGTATATACTGCAGGGGAACCTGGCCACTGCAGTGGCCACAGCAGGCAGCCAGAACTTTCCTCCAGGGTCAGAACCGAAGACCGCCGTGCCAGACCTGAGACCACAAACCCAAGCTGCTGGGCAGGAGGACCTGAAGATTTCTGATGGCATTCATGATGTGGACAGGTTGCAAAACGATAAATACATGATGAAACTTCATATGCAAGAAAGAGCAGTTGAAGAAGTGAAATTGGCTATTAAGCCTTTTTACCAGAAGAGAGAGATCACCAAGGAGGAGTATAAAGACATTCTAAGGAAAGCTGTTCAGAAGGTTTGTCACAGCAAGAGTGGGGAGATCAACCCGGTCAAAGTGGCTAACCTGGTCAGGGCGTACGTTGACAAGTACAAGCATGCCAGGAAACACAAAAGTGAGCCAGAGGGATCGAATAAGGAAGCTGTGAGGACCAAAGATCTTGCAAAGTCCTGAAGACCATGAATTTCAATCAGTGGGGAAAGTAGAGCTACCATCTGTCaaaaatcctttcttttttatagtAATGTACAACTTGTAGCAACACAAGTGTTTTGGACAGCTGTGTTCCAgtatgtcattttttaattgtttctagAATCCTTTACTGAGAATGAACAATGGGGAGGaatgcatttgaatgtttttccgtttgttttttggggttgtgttcttgttttttttaacaggtgCTAATTTAAGATTCACATAATTTTGAAAATCAGTGCTTTTGTAAACTGCTTGAGTCTGCATCCTATTCCACATGTTTGATCCCTCCCACAAaggcctgcctgcctgcctgcctgcctgcctgcatcGCAGCAGCATCTCACTGCTTGGTTGAACAGCTGTCCCATCATGTCAGTAGCTCACTCTTTTGACCCCTTTTAGTTTGCGTGAACTGGTCATTGCGttgataaaaatgtacatttaagcACACTTCATTGCATCTGCATCCAAAGTGGTATGAATCATTTCATTTAAGCTGATATTCAGGAGAAGAAATCACAaaaattaacacttttaaaagttgTAGGATTCAACTAAATAACTAGATCCCACTATCTTAATTTGGGCAACCTTCACTCGCAAATTCAGGTCTGTCCCCTGTTGCTCTTACACTTTTTATATTGccttgttttggtgttttttctgtggttgtttCATGTCCTGTCAACCAGCATTTCAAGATTCAATCACCATTCATTTCTCTTAAATGTAATGCCTTTCTTGAACCACCAAATGTGATCAGTTTCCTTCTTCTTGCAATAGGTGAAACCCCTTCTATCTGGTTCACTGGGGAATTAGCTTTGAAAGTGCTATACTATGAGGTCCAGGATCAAGAAAGGAAGTTCATGTCTAACCTTATATTGAAAGTAATATAGTAATGTAATCCAATATAGAAAAAGACCCCAGTTAAATGCATTGGGTAGGTAGTGACCATATTTATTTGGTCTTAATTAGTAGGAGGTTTTGAGTTGGGTTCCAATTTCTCTACAGTTTTTCAAAGGAATGCAACAAAACAAGCGGGAGAAGGTGGTCAAAAGTGACCAAATAGTTGCTTTTTCACTTCAGAACATCAGAATTAATAAAAGGGGAATGCTTTGAAAActgcatttccaaaaatgttGGTTTAATGGACAATTGTCAAATTAAGTTACTAATTTGACCAAATGAAAACGATATTGGTCCTAATTCCCTTTTACAATACGATTAATTTTCTCATACATTTAGTATTATGTAGaactttcaaaactgaaaaccatTCTGTAAACTATCTTAAAACTCATTGCATAAAATACACCTGTTGATTCTGACGAGATACATGATGTATATGGTGTTTTCACTTCTTTTTCTTCGTACTAAAATAGTAGACGTGATTTTGGGGACTTTAGCAGAAGCAGAATCATTGGGTCCCCGATTACTTTCCTTTATTTAACACTCAAAGCTGTTCAGATCAGACAGAGGCCTTTATATCAATAAGATATAGGGTTCAAATCCAAAATAATCTATTTCATCCTTAAGGACACAACACAACttccaaaagctttttttcttgATTAGTCCACTAAATTGCAGTTTTAGCAGCATTAACCTATGGAAACAGAAACGTGAAACTGAAAGACATTTTGAATACTTTCGAGAGATTAAGAGGAATTTGGATTTCCGTATCACAGGCCTGCTATGTGCCGCATTTGTTTCAGTTGTGGACTTTCTTTGCAGGTGTGTCATggattgatttttgttttgttttgtttgtttgctttgttattaCTTGAAAATCATTCACCTTGGAAATGGGGGTCACAGGCTGTAATTTGAATTGTGCTTCTCTGAATACCTTGATTTTATCGATAATCGTATTAACCATATCGACTATATCCttatttaatgtctgtttaATTGAAGTTCCTTTCCTGGATTTTGGTCTGTAAATAATGTCCTGGGAGGTTGTGAGTGGCCCCAGTTGTTTCCTTATTGGATGACAAACAGTATCTGGTTGTCAAGAATACATGTACAAAGCCCAGAGAGTTCAGGAATTACTGAGAATACGTTCATGTGTTAAGTTGCCCTCATGTGCTTATTTTGTCCACTATGTTGTGAACTGTGTTGAGgcagaattaaaatgttcagaatAAGTGATCAAGGTAGAGTGGGTGTTTTGCtctgaatgttttcttttttctctgcttagtatttcaaataaaagaaGCATGCTTGTTTAAACACAAATGAGCACATCAATGCCCAATTTGGAGGGGGGATGGGAGCAAATTTGTGTTAATTCTCTagtcttctattttttttaacccccccccccccatttatttTGAGATCTCACTGCTCATGAAATGCATaatagaaatgtgaaaaactgaacaaaacaaaaaagtggtttgcaaattaatttttaCCCCCTCTactgtaaagttttttttttctctcaaaaacATCTacagagaaaaatgtttttttttttggtattatgTTGAAGAAACAATTGTGTTCATTATCGGTTGAGCCCTGCCCAGCTGGGGATTGCAAAACTATGATGATCCAGGGATGAATAATGCCTTGATCCAGCCCTAATCTTCGAGTATAAGTCTTGGGTTAATTAATCTTAGGTTAACTGTCCTAATTTAACTGTAATGTTGGAAACTTGAGGTTTCCATTTgagtatttgtaaatatattt

Function

symbol description
phrf1 Predicted to enable metal ion binding activity. Orthologous to human PHRF1 (PHD and ring finger domains 1).

NR:

description
PREDICTED: PHD and RING finger domain-containing protein 1

GO: NA

KEGG:

id description
K17586 PHRF1; PHD and RING finger domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00007346 True 7809 mRNA 0.45 18 15189288 15210018

Neighbor

gene id symbol gene type direction distance location
AMCG00007347 NA coding downstream 4308 15176186 ~ 15184980 (-)
AMCG00007344 LOC105018338,LOC107562830,LOC107675263,LOC107707530,LOC107085412,LOC103380394,LOC101069290 coding downstream 35580 15152428 ~ 15153708 (-)
AMCG00007340 NA coding downstream 251761 14935599 ~ 14937527 (-)
AMCG00007333 NA coding downstream 763784 14407144 ~ 14425504 (-)
AMCG00007331 NA coding downstream 862788 14286615 ~ 14326500 (-)
AMCG00007348 NA coding upstream 11079 15221097 ~ 15277958 (-)
AMCG00007349 NA coding upstream 78322 15288340 ~ 15313433 (-)
AMCG00007353 LOC107707550,LOC106953705,LOC103466147,LOC101079446,LOC106515651,LOC108239988 coding upstream 167600 15377618 ~ 15385002 (-)
AMCG00007359 mob2,LOC108411394 coding upstream 540090 15750108 ~ 15756250 (-)
AMCG00007358 mob2,LOC102782240,LOC108411394,LOC106561048 coding upstream 546275 15756293 ~ 15775512 (-)
G23105 NA non-coding downstream 57690 15131388 ~ 15131598 (-)
G23101 LOC101154678 non-coding downstream 164543 15024241 ~ 15024745 (-)
G23011 NA non-coding downstream 709089 14478596 ~ 14480199 (-)
G22971 NA non-coding downstream 999600 14184702 ~ 14189688 (-)
G22943 NA non-coding downstream 1123990 14063495 ~ 14065298 (-)
G23225 LOC103376870 non-coding upstream 524607 15734625 ~ 15800952 (-)
G23250 NA non-coding upstream 858065 16068083 ~ 16069464 (-)
G23344 NA non-coding upstream 1168500 16378518 ~ 16380291 (-)
G23379 NA non-coding upstream 1450863 16660881 ~ 16662665 (-)
G23397 NA non-coding upstream 1496271 16706289 ~ 16709180 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 1156076 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 1243223 13945643 ~ 13946065 (-)
G22838 NA other downstream 1837215 13351517 ~ 13352073 (-)
AMCG00007298 NA other downstream 4916593 10265045 ~ 10272695 (-)
AMCG00007289 bet1l,LOC107740886 other downstream 4999084 10187308 ~ 10190204 (-)
AMCG00007366 NA other upstream 1027443 16237461 ~ 16314032 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other upstream 1110979 16320997 ~ 16345580 (-)
AMCG00007375 NA other upstream 1259449 16469467 ~ 16621905 (-)
G23661 NA other upstream 2845452 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 2992441 18202459 ~ 18208020 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000330_01180674_01200580 PHRF1 coding CI01000330 null 1180674 ~ 1200921 (+)