G23011


Basic Information

Item Value
gene id G23011
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 14478596 ~ 14480199 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU28842
AGTTACAGACACATCTCtatgttaaaaacatttgtaaaaaaaacaacaactaaataaccaggactaaataaagaaaaaaatgaattaagtgAACATTTAACAAACAAAGCCTTAAAATATGATGATTTATGTCggttacattattataattttcatattacatggaaaacatcatcatcacaaACAAGATATTTCAAATGATGCCCATAATAAGTAGGATGATTAATGCAATACTGTTGACCCTCTCTTTACAAATTTCCTTATTAACAGcacataattgttttttggTACAAAGCAACCAGGATGGAAACCAGGGGGAAATTTGATACAAATACACAGCACAATCACTTATCACTTAAAATCAGTCAGGGCCATAAGTATTCTGCCTATTAATGTTGCTTGTAATCATTTGGATTAGTAgaatactgtaaaaataaagcatgatCGCAATGACGATCAGGGAGAGAACGGTGGCAGCAATGTTGAAATTCCGGGACAGCCTCCCATAGTGTTTGGCTTGGTTCAGGTTCCTGACGACTTTCTGGTCTCTGGCTTTATGGAATAAAGAAAAGCCACCAGTCCCAGACAGCAGCAGTTGAGATAGCTGAAGTTGAAGATAGACCAGATGATGTGATCTTTCACAGGAAGCTGCTGCTCAATCTCCACCACGGTGACGGGTCCATAGGCCTTGTTCTGCGTGTATCCGATAGTGGGATCCATAGCTCGGCTGGTACTTCTCTGCAACGGAAGAAGCAGTCAGTCTTGCCAAGCGATGTGGTTACAGACGAGCAACTAAAGCGCTCTTTATAATGTCCCTCCCTGGCTGGGATAACGAATCAGGACCTCCCCTTTCCGCTGTCTATATTACTGCATACCCACTGGGGCCA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU28842 True 887 lncRNA 0.40 2 14478596 14480199

Neighbor

gene id symbol gene type direction distance location
AMCG00007333 NA coding downstream 53092 14407144 ~ 14425504 (-)
AMCG00007331 NA coding downstream 152096 14286615 ~ 14326500 (-)
AMCG00007330 NA coding downstream 204162 14274060 ~ 14274434 (-)
AMCG00007324 NA coding downstream 537925 13939340 ~ 13940671 (-)
AMCG00007325 NA coding downstream 566748 13894885 ~ 13911848 (-)
AMCG00007340 NA coding upstream 455400 14935599 ~ 14937527 (-)
AMCG00007344 LOC105018338,LOC107562830,LOC107675263,LOC107707530,LOC107085412,LOC103380394,LOC101069290 coding upstream 672229 15152428 ~ 15153708 (-)
AMCG00007347 NA coding upstream 695987 15176186 ~ 15184980 (-)
AMCG00007346 phrf1 coding upstream 709089 15189288 ~ 15210018 (-)
AMCG00007348 NA coding upstream 740898 15221097 ~ 15277958 (-)
G22971 NA non-coding downstream 288908 14184702 ~ 14189688 (-)
G22943 NA non-coding downstream 413298 14063495 ~ 14065298 (-)
G22942 NA non-coding downstream 416461 14061734 ~ 14062135 (-)
G22941 NA non-coding downstream 417467 14060770 ~ 14061129 (-)
G22902 NA non-coding downstream 828819 13646531 ~ 13649777 (-)
G23101 LOC101154678 non-coding upstream 544042 15024241 ~ 15024745 (-)
G23105 NA non-coding upstream 651189 15131388 ~ 15131598 (-)
G23225 LOC103376870 non-coding upstream 1254426 15734625 ~ 15800952 (-)
G23250 NA non-coding upstream 1587884 16068083 ~ 16069464 (-)
G23344 NA non-coding upstream 1898319 16378518 ~ 16380291 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 445384 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 532531 13945643 ~ 13946065 (-)
G22838 NA other downstream 1126523 13351517 ~ 13352073 (-)
AMCG00007298 NA other downstream 4205901 10265045 ~ 10272695 (-)
AMCG00007289 bet1l,LOC107740886 other downstream 4288392 10187308 ~ 10190204 (-)
AMCG00007366 NA other upstream 1757262 16237461 ~ 16314032 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other upstream 1840798 16320997 ~ 16345580 (-)
AMCG00007375 NA other upstream 1989268 16469467 ~ 16621905 (-)
G23661 NA other upstream 3575271 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 3722260 18202459 ~ 18208020 (-)

Expression


Co-expression Network