G22971


Basic Information

Item Value
gene id G22971
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030123.1
NCBI id CM030123.1
chromosome length 53548854
location 14184702 ~ 14189688 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU28799
TAAAGTTTGACTGCAGTAATAAACAATCACAATAAATCCAACATCAGAGATCAGGTTTAGTTATGAATCAACATTTATTAGTCTTCATAATCTTATGTACATCAAAGGTACAACACTTAGTGATATGTAGTAACAGCATTTTATCCCACTTGTCTGGTATTGAAAGgattttaaatagcttttattttctttttaatgtctttttacATCAGAATTACAGCTATAGATTCACAATATTTcgaaatctttaaaaacatctctaaaaatagaataaaattaaGGAAAACGGAAAGAGTGAGAAAGGTTACTGATTCTACGATATAAGATTTCatcaaaatacagaaacatcaGTAGAAAATAGAGACTTGTACATTAACTGGCTCATCATAGAAATGTTGTGCCTAccttattcttttttaaatgtgcgcagagatttccttttatttttctttattagaaaataaggaaaggaaaaagcCAAATTTAAAAGCAGGTGATTACAAGCAAAATCTGAGGTTGAAACCAATCCTTTATGAGCTACACTGGTAAATTCAGTGTAATAAAATGGGTGTTTTCTTGTAAGATTGGGGAAATGAAACTGATAGCTGATCTTTGAAACAGTTTATCTGTTTTTGATAAATTAAATAGATTGCTACATTCAACATGTTTCAGGTGGATTACTCTAATATTTCTAAAGCTGAAAAAGGAGAATTCAGATAAACCCAGCAGAAGGAGGAAACGATGAAAGCAGTATTGGAATTGGTGGTTCAAAGGAATCTCCCAGCCCAGCAAAGATTGCACAGGAATGTTAATATAGTAAACgtgttttcttctttcacaGTCTGAAATCCCAGCTGACACACCTGGCACTGTCTGGACACCGAGGATCAGTTCTTAACAGACACTGCCATGGTTTCATAAAACTGGGGAGAGGGTCCTCAAACAAGGATTAAACCATAAGAAAGAACCTGACATTTTTTATTCCAGTTCTCTTTGACAAATACCTTTTTGTGCTATTCAAGTTAGTTTAGTGTGCTTATCCagagctttttcttttcagtgggAACAGGCTTGACAGACTTCTAGTTGTCTTTAATAAATTTGACTTTTTCCTCTTGTGCTGTAAGCCTACTTAACCATCACAGCAATACCCATACTCCACAAACCAAGTAACATGACCCCACTTAAATGGACAAATTCACAGCAAGAAAGTTAATGTCATGGATAGTGTTCAAGTGAGCATTATCATATATCTGGAACATTCTTATTTGCTATTTaacatagaatatatatgtacaataaaatgaatgcacgcatgacttttaaattatgaaacaaacatttgaaatgtttacattagattaaaaaaagacagatatttatatattggaCATGTAGCAACTATGCAAGACTAGTTCAAACTAACAACTAACCAAAATGCAAAGacaagcaatttattttttaatcccttTTTTCTCAGCTATTTCTTTTACAGAGCACATAGGCAGGACTTCTCTACAGGATTACAAAATAGTCACAGGAAGTAAACACTATCCCTATACACCATTTCACAGAAATTTGAAGACTGCTacctaaaatatatacacaaagtgCAAGGAGGCACTTTTATATCATGCTTTCAGATAGTAGTACAAAAAGGTACATTTAAACTCCATGCTTCTACATCAATCAGTTAATACAGTGAATTGGTTAATCACTCAATCCCCTGAGGTGAAAGTCTGGTCTACCACCACTATTAAAATCAATACCTGAAATACCTGAAAATCAGAAGGCCTTATAGACTATAGAGAGTATAATTACCTCTCTATAGCAGTGCATCCAGTATACATATGATGTATGGAGGAATACTTTTACTTAggtgtaatttgtgatttaaataaaccCATGGTGTCAACTAGAGTGACTATTTTTTGGATAGGATAAAGGAAAAAGTAAATACGTTTTGAAACAGAAGTACCTTAAAGGCAAATACTTTCTATTGCTGGATTTACACACTGATATGTTTCCGATATGTTGAAAATCCTTTAGATATGTAGTCATATACAATATGATACATATATGCTATAGCATACAGCTATAACACTGAATTGCCTTCTTCAGTCTGTAGTAAATAATTGCAGATAAATGCAGGAAATCACCTGAAGGGATTGGGTGCTGTAATAGGAATGGCtgttaaatgtctttatttataaaataagaattCTAATAAGAATATTCTTCATTGTCACCATCATTGTAATCATCATAGTGGTTGCTCTGTTTACAGTTAACATCTTCAAGGCAATGTtgtcagtgaaaaacaaaaacaaacaacaaaataaacaacatgcacacacaacacatgcacacatgcacttgcacatacaacaaaatacaaacaactgGTCCAATGGTTGCTGCCATTTGGTTCTGTTGAGAGGAAACAATTCACCCTTTTACTACCTGATAGGAATGTACAATATTTAGAGATATAGTCCAGGTTTATAGTCAGTGCTCTGGCTTTCTGATTATCATGTCTGCAGCATATTTGCAAACACCTAAAAGTATGCTTTTGGAAACAAGACACCCCCTTTGGAGGTAATAAGAACAGTCATAAGCTTTGTAATAGGCAGAGCATGAGTCCCTGTACTTTGGGAAAATCTCCTGATTAAATGTCAaggcaagattaaaaaaaagtttatcaAGACTAGAGATTGGGACAGGAAGCGCTATTGTTTAAGATaggttgtattttgtgtttattttatttttaaacacaaatattggGAAAAGTCCCCTGGATATACTACTAAACTTTTAGAAAACATCACAGCGTActgagaaatgaaaatgttgacCTACTGGGTTACTGGGCCCTTTCAGTTCTAAGGAAAATTGCAGACAAATATATTGGAGGTAACAAAACAGGTAAACAACCAGACACAGTATATGACatctctttaaaaacattttttctcatacatttattttcaagagaggcaggtttcaggaagtcattttaaattccaCAGACAGGTAGACTGTAAAAAAAGAACACTTTTCTTAGCTTCTCTGCAATACATAACCTTTTTtcaattattgtaaaataaagggtatataaatgtttttgaaaaccaGTCAGAAGACATTATGAATGCTTAAAGTGTACTCGAATTCGGGGTGATTGGACTACAAaggtaatgtatatttttaacagttttcaaatacaatatgcaGCATTTGCCAACATTTAAGCTTTGAAGAGTGTTCTTTCAAAGATTACATTGGAGaacatgtgtattttttggTTGCTGTGTACAAATGTACCAACAAATTGAAAAAACCCAACATAAAACTCCCTTTCCTTGAAAAGAGAGGTAAGAGGGTCCATGTTGTGTGCTTCTATTTTCTATTAAGATATTCTGTGATGTACAGCTGATGAAAAATTGTCTGCCAATGTATAATCACTAAACTAATAACTCTTGTATTGTATACTGGTATCCTGGCAGTCTTATAGCCGTATGTGAATATTATATGAAATTGAAAGGTACAATAATCAAAAACTGCAAACATGATAATACTGATACTGTCAACCAATCAAGTTATCAacttatgttttatgttcatgtGTATGCTCCCTAAAGTCTCTTTAGGTATGATATCTGTACCCTTGTGACTGATCTCATTCAAGAGAACCAAGCTGTAACAAAGGCTAGGTTTCATTCTGACCATAActctaaataattatttttccttaaatagGGAATGgtatattaaaccattttactAGCTTTAAGAGggttcattttaaaaccaacttgtttttatataaatacatttttgggagATGTAATACTGACCACCTTTGCACAATTTGTTCAATTGAAAAGTCTGTAAATGTGCCTATATCAGAGCTTTGATATTCTCACATAGTGACCCTATTATTATATCTTGGATAATTCCataattaaagaagaaaaagtggactatgtatgttttaattccCTTAATgcagttattattgtttttattcatgaggtgaaaaacatatatatatatatatatatatatatatatatatatatacacacctctGAATCTATGCAATCTAAGAAGTTCCCTTGGTGCTgacaatacataaaaagtgaATGAATGATTATGCCATGTGcttgaatttaatttgtagtGTTATCCTTTGCTTTTTCGgacaaaataacttaaaatggGAGAGCCAGCacacttttttccctccccaTTAGGCTGCCTTGTCCGTGTCTATGAATGGAAAAGAACAGTGCAGACGGGGATCATCAGAACACCTGGAGGTATAACCGATACTGCACACGACTCCCCCTGAGTCTCTTTAACAAGGAATCCCTGTCTTTAACTGTCAATTACCACCAACCCTGGAAGTTTTTCTCTACTACCAGGAATGAGCCTAAAGTAATGGCTTCCATAGAGATCATCAAGGTGAAGGTGGTTTTGAAAAGAGAGTCAAGGTGATAAAAGTGAATTTACAAGCACCAGTCTTGAGAGCCATCACTGATTTCACAATGTCAGGCCGTTCATCATCTTTTTCCCCTCTCCATGGTTATTGGATTGCCTGCATCAAGCCCACAGCTTCTCTTCAAAGCACAGCTCAATAAAACGGGGCTTTTCTACCCTCCAATCCTTGACATTACACAATTACAACAAAACACATACTAGTAAGTTAGTTATTGGAGAAGGTTAGTAAGGTATATCAGTTAATCAGTAGGTCAGTCGTGATCGGTtgagaatgttttgttttttaagctaAATTATGAAACCaattattagttttgtttgattgatggattttagtttctgattttttcatttttgttttttgctttgatttcacCAGGAAGAAAGCTTGTGCAGCTCAGGATAAGGCGTAGCTGGGGtctgtgttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28799 True 4934 lncRNA 0.34 2 14184702 14189688

Neighbor

gene id symbol gene type direction distance location
AMCG00007324 NA coding downstream 244031 13939340 ~ 13940671 (-)
AMCG00007325 NA coding downstream 272854 13894885 ~ 13911848 (-)
AMCG00007323 NA coding downstream 328305 13743970 ~ 13856397 (-)
AMCG00007318 NA coding downstream 497638 13677981 ~ 13687064 (-)
AMCG00007319 NA coding downstream 570257 13576675 ~ 13614445 (-)
AMCG00007330 NA coding upstream 84372 14274060 ~ 14274434 (-)
AMCG00007331 NA coding upstream 96927 14286615 ~ 14326500 (-)
AMCG00007333 NA coding upstream 217456 14407144 ~ 14425504 (-)
AMCG00007340 NA coding upstream 745911 14935599 ~ 14937527 (-)
AMCG00007344 LOC105018338,LOC107562830,LOC107675263,LOC107707530,LOC107085412,LOC103380394,LOC101069290 coding upstream 962740 15152428 ~ 15153708 (-)
G22943 NA non-coding downstream 119404 14063495 ~ 14065298 (-)
G22942 NA non-coding downstream 122567 14061734 ~ 14062135 (-)
G22941 NA non-coding downstream 123573 14060770 ~ 14061129 (-)
G22902 NA non-coding downstream 534925 13646531 ~ 13649777 (-)
G22901 NA non-coding downstream 553411 13630245 ~ 13631291 (-)
G23011 NA non-coding upstream 288908 14478596 ~ 14480199 (-)
G23101 LOC101154678 non-coding upstream 834553 15024241 ~ 15024745 (-)
G23105 NA non-coding upstream 941700 15131388 ~ 15131598 (-)
G23225 LOC103376870 non-coding upstream 1544937 15734625 ~ 15800952 (-)
G23250 NA non-coding upstream 1878395 16068083 ~ 16069464 (-)
AMCG00007326 pamr1,LOC107570358,LOC107710987,LOC107685072 other downstream 151490 13981374 ~ 14033212 (-)
G22931 LOC100846954 other downstream 238637 13945643 ~ 13946065 (-)
G22838 NA other downstream 832629 13351517 ~ 13352073 (-)
AMCG00007298 NA other downstream 3912007 10265045 ~ 10272695 (-)
AMCG00007289 bet1l,LOC107740886 other downstream 3994498 10187308 ~ 10190204 (-)
AMCG00007366 NA other upstream 2047773 16237461 ~ 16314032 (-)
AMCG00007365 cars,LOC107578099,LOC102789774 other upstream 2131309 16320997 ~ 16345580 (-)
AMCG00007375 NA other upstream 2279779 16469467 ~ 16621905 (-)
G23661 NA other upstream 3865782 18055470 ~ 18058949 (-)
AMCG00007418 fem1b other upstream 4012771 18202459 ~ 18208020 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G39502 NA non-coding NC_048565.1 CM023219.2 37077411 ~ 37196648 (-)