CI01000330_01112605_01119220


Basic Information

Item Value
gene id CI01000330_01112605_01119220
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000330
NCBI id null
chromosome length 4651236
location 1112605 ~ 1120106 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000330_01112605_01119220.mRNA
ATGATCGCTTATTATTCTCAGTATTTCCTCAGGGATCTCGGAACCAGCCTTTCCCACCTGCAGGTCTTATGGCTGGCTCGATGCGGTCTGACCGACCTGGAGGGAATTTCTGCTCTTTCTTCCTTAAAGGAGCTGTATGTGGCATATAACAGCATATCAGACCTGAGTCCGGTCAGTATGCTGGAACACCTGGAGCTGTTGGACCTGGAGGGGAATGATGTTGATGATCTGGCTCAGTTGTGGTATTTAGGCTGTTGTGGGAAGATCAGAATGCTTTCACTGGAAGGAAACCCTGTGTGCACCTGCCCCAGTCCAGGCATGTCAGAGTTATTAGACTACAGCTACAGGTCTGCGGTCCGTGAGCTGATCCCTCAGTTGAGTGTCCTCGATGACGTACCTGTTGAAGAGGACAAACCTCAATGCTGTAGAACTTCACTGCAGGATTGGACTCTTCTGAAAGAATCAATCAAAGATAGTTCAGTTAATGACAGCCTGGAGCACACAAATACAGATACAGAAGAGAGATCTGTCAGTGTGTGCGGCATCAGACCTGCTTCAGCCCGGCCTCTTGATCTGAGAATCTCCTCCAAGAGTCTCTCCAGCAGTCCAGGCAGTGCCAGACCTTTCACTTCCTGCACCAGGCCAAGAACAGGGTTGACCGACTCCGACATCGCCATCTTGAAACACAGGGCCAGTGACCTAACAAACGGTTTTGTTCTCTGTGGGAATCCACTACAGGCTGTTCGAGCACAAAGACAGAAAATAAAGCTCCAAAACTCTCATTCTCAAACCCGACCCAGCACACGGCTCAGCAGTTACGTTCCTGAACACACATATGACTATGAAGAGTCAAGCAGTGAGGACCGCAGCAATGTTTTTGCTGAGCTCAGAAGCAGGCGAATTGAGCACAAGAAACATCTGTTGGCTATTGAGAAGGACCGGCAGCCGCAGGTGATGAAAATCCACCACAGTGATGATGAGTGTGATGATGAAGGCAACCACAGTCATAGTTTCAGCAGTGATGACGTCACTAAAGACAGAAACACAAGCTCCCCTGATTCATCCTTTCAATCTCCCTCACCAGAATCTCCAGAGATGTTGAGATTAACCTCTTCTTCAGACTGCTCCATGTCTCCCTCACCTCCGCCTAACTCAGCAGCTCCCCCTGCCGGCCGGAGGATAATGCAGATCCGCACTAGGAGACTCAGACCTCATTATGCTGATATCAGTAAACCAGAGGAGACTCCTGGGACTGTTCTCAGAAACTTGTGTCCCCAGAGTATTATGACTGTATCATCTCAGACTGAAATATTTCACAAACCTCATAGACCCTTTGTTAGTCCTGCGGTCTCCCCTCTTGGAGCGCAAGGGTATATTCCCACCATTCCTGTTTAAATTCATATTTATGTGAACTATAATTTTAACAAATGCATTTCTGACTACAATATATTCTCCCAATTTAGGTCAGAGGATACTGGAAATCATCAATACTCGGACATCCAGCACAAACCAATAACACTCTCTGAGAAACTGACACCCAGACGTCCACAAACAGCCAGAGCTGTACTGCAGAGGCTTCCAGACCAAAACCGAAGAAACGCCCATCTGGAATGATGGACTGTGGGTCAGATTAGGTCATACGTCTTCTCACTTCAGGTTTACAGGGTTTCAGAACCACTGTAAAGTCTGCTGAAGTTGTCACTTACATTGCTGAATCATTAGGGGGCGCCATCTCCATTATGATAAATGCTTGTTTTTCTCTGCTTTAGTTTAGATGTATTCCATTACAGGAGAGAGTCTTGGTCCAGATATTATGTGAACACTAATACAGAGAAATAATACTCTAAGTGTCCCATTGAGACATTATATTTGACGTTAATGTCAAATGACTCATGCTTCAAAACTGTTTTCCTGTCAAAGATCTCCAACAGCGCAGCATCCCTATCTGTCAGATTCTTGACATGTCTGGTCTTGCAGGTACAGTGTGTGCAGACGCAGGTGCAAGACTGTTACTCCACATGTCTCTGAAATATTTTCCACAGATGACAAGTCAGATAACAGAGTGTTCTGAGAAGCCACATATAATTAATCTGTCGATAATTTCTACAGGGTCCAAGCATTTGGGCAGTATTTAGGTTTTTTAGTATTTTTAACAATGTACAGTACATCCAGATATATATCTCAATGATAAAATAACAAAATACAATACACATAAAACGACTAAAATACAGTAAGAAATTTTGTTGGAGGGTTACAGTTGAACATCAAATACTGTTTGTTA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000330_01112605_01119220.mRNA True 2281 mRNA 0.45 8 1112605 1120106

Neighbor

gene id symbol gene type direction distance location
CI01000330_01043094_01051071 LDH-A, LDHA coding upstream 61534 1043094 ~ 1051071 (+)
CI01000330_00698127_00755584 ABTB2B, ABTB2 coding upstream 357021 698127 ~ 755584 (+)
CI01000330_00514166_00689989 B4GALNT4A coding upstream 422277 514166 ~ 690328 (+)
CI01000330_00483566_00485212 MGC80058, TMEM86A, TMEM86A.L coding upstream 626175 483566 ~ 486430 (+)
CI01000330_00432956_00445829 NA coding upstream 666014 432956 ~ 446591 (+)
CI01000330_01162093_01168098 RASSF7A coding downstream 41987 1162093 ~ 1168325 (+)
CI01000330_01180674_01200580 PHRF1 coding downstream 60568 1180674 ~ 1200921 (+)
CI01000330_01225611_01226156 ASCL2, ASCL1, ASCL1B coding downstream 105139 1225245 ~ 1226920 (+)
CI01000330_01348143_01348817 NA coding downstream 227712 1347818 ~ 1348817 (+)
CI01000330_01364642_01375705 HEXA coding downstream 243272 1363378 ~ 1376127 (+)
G473662 NA non-coding upstream 45404 1061760 ~ 1067201 (+)
G473546 NA non-coding upstream 352637 759644 ~ 759968 (+)
G473545 NA non-coding upstream 353380 758867 ~ 759225 (+)
G473440 NA non-coding upstream 463146 637996 ~ 649459 (+)
G473441 NA non-coding upstream 569958 533307 ~ 542647 (+)
G473648 NA non-coding downstream 93584 1213690 ~ 1217964 (+)
G473711 NA non-coding downstream 118963 1239069 ~ 1239334 (+)
G473713 NA non-coding downstream 121271 1241377 ~ 1241703 (+)
G473738 NA non-coding downstream 158243 1278349 ~ 1278639 (+)
G473739 NA non-coding downstream 169620 1289726 ~ 1290008 (+)
CI01000330_02046876_02054740 NA other downstream 926675 2046781 ~ 2054740 (+)
G474750 NA other downstream 1274051 2394157 ~ 2399678 (+)
G474771 NA other downstream 1379996 2500102 ~ 2510170 (+)
G474777 NA other downstream 1391350 2511456 ~ 2514764 (+)
G474807 NA other downstream 1474940 2595046 ~ 2598105 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location