AMCG00008849


Basic Information

Item Value
gene id AMCG00008849
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13268534 ~ 13273981 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008849
ATTCTTCCCATCCTAcgcagtttcttttttgttgtcgGCTTCTTCCCTGAGTCCCCGATTACCACAACTATTATATCAAGACTGGCTGCTCTACGTTACTGCTCCGTTACGAGACCCAAACCAACCGTCTTTGATGTCACGGCGGGTCTCACGCTTACAAGAATGGAAATACCCCACGGGCGCTACTGGGAACGTGCCCTCATCCTAGCCACTGCCCTGCTGTCACCTATATACACCACTGTGTGCCTGAGGCTGGCAGGGCTGAGCAGGCGGCAGATGCGCCTGTGTATGCGCAGCCCTGACGTCACTGCCTCTGCGCTGCAGGGCCTGCAGGTGGCGCTGCATGAGTGGTTCCGGGAAAGCGCATTCTCCACATCGCTGCTAGCGGCGGGCGTGGCCCACTCGGTGGCAGCAGCTTGCAGCCTGGGGAAGCTGCGTGGCTGTGGGTGTGAGGCTAAGCGCCGGCTGGACGAGGAAAAGCTCCGCCTCAAACTCAACCAGCTGCAGCAGAGACACGCCCACCCTGCCGGGCTCGCCCCCCTCCACGAGGAGCCCCCCTCCCTACAGGACACCTGGGAGTGGGGGGGCTGCAGCCATGATGTGCGCTTCGGGGAGCGCTTCTCTCGCGACTGGCTGGACGATACCCGCCAGGCACACCGCGATATTCACGCCCGCATGCGGAACCACAACAGCAGGGTGGGCCGACAGGTGGTAACGGACAACATGAAGAGGAAGTGCAAGTGCCACGGGGCGTCGGGCAGCTGCCAGTTCAAGACCTGCTGGCATGTGACACCCGAGTTCCGCCAGGTGGGGGCGCTGCTGCGTGAGAAGTTCCAGTCAGCCGTGTTCATCAACTCGCAGAACAAGAACTCTGGCGCCTTCAACCCCCGGGGGTCACAGTCTGGGCAGGGGGGCGGAGCAGCAGGAGGAGAAGGAGCTGGGGGTGTGGCCCGGGGGCGGCTGCGGTTGCGTCTGTCCCAGGAGCTGGTGTACTTCGAGAAGTCTCCGGATTTCTGCGAGCGGGAGCCTGCGCTGGACTCCCCAGGCACCAGGGGGCGTGTGTGCAACAAGAGCAGCCAGAGCACAGATGGCTGCGGCTCGTTGTGCTGCGGCCGTGGCCACAATGTCCTGATGCAGACGCGGCGCGAGCACTGCCATTGCCGCTTCCACTGGTGCTGCTACGTGCTCTGTGAGGAGTGCCGGGTCACCGACTGGGTCAATGTCTGCAAGTGACCTTTTGACCCTCAACTGACCCAAAAAGACCCGACCTGACTAGGCCCACCCTCCTTCTTGCCTGTCCTGCTCCCAAAGCCATCCTAATAAGCAAGCTTCTCTAAATCCAGACCCCCCCCTTTTCTCCAGCCTCATCATGCCATTTGCCCAACTTCTGCACTGCCCCCCcacttccttctcctcctccattCCTAGTCCTAACCTGAGCAATGCCCTCTCACCATTATAACCCTGATATGCTCTGAcgctgttttttaatgtttttaaattcctggtgtcatttttgttttagtgaaaaatacctttttacaagataacaacaacaagaaaacaggaGCCCCCGACCCAACAACTCAACAACAAATGCCTCTCCCCCTTTggagaagaatatatatatctgccacagcacttttcttcttcttcctcaaTGTGTGGTTGCTCCTCCCTTCTCGTTTTGCGGACTCGTTATGGGTAGACAGCATGCAGGGACTGAGTGAAGAGGAGAGGACAGTCTGACACGCAGGCAAACTCGTCTTCTCTTTCGACATGGAATCTGGGCCTAGAGCCTGTGACACAGAAAATGCAATCCAAGCACCACTCTGTTCCACTGCACTGCCTACTATGGCACTGCCTGACTGGAAAGGTGAGCCGCATTCTGTCAGAGGATCAGGACAGCTAAACTTGGCTTGGAGTAAAACctgtttcttttccatttcaaagaCCTCCAGGAACCACCaatgacagaaaacagaggGGACTAGGGGCTCCAGTGTCTCAGGAGAAGGGTCTGttacagtcagtgactctgtAGCACAGCAGTGCAGTTCAGTTCATTATTGTACAGTCAGTGAATTCAGCAACAGTACAGTTGTTGATGCCATAGCAAACCTGTAATATAACTCTGACAATAGTATGCAGGATTAGGGAGCTTTAACTGGGAATAAAGGAAATGCtttgcagacacacagagaaagagagagagagacagagacagattaTGGGACGTATGGAACAAATTGTCTTGCCTTGTCGTAGATGCTGATTGTGTTGGGATGGGGCCAAGGTCTTCCGTGAAGAGGGCCGGGGAGCAAGGATGATACGAGCAGCTGCAGGAGCGAGCCGGGCTGAATCAGCCTCCACTCTAACTGGCTGCAGGCCCAGCATTGTGTGTGAGCCAGGAGGGTGGAAAGGGAGCGGACAGGGCAGTGTTTCGTCACAGTGTTGCGGCCCGGAAGATCGAACTGCcattgtgtgttgtctgtgtggtttgttttgtatacaaaagtatgaatgtcttttttttattacgtTTTTGTGAATGAAGGCAGAGCTAACATGACCAGGATATATATTCGTCCATCTTTGTTTGAGCCTTGTAAGACTCTTTGAGATGTATCCCACCGCTGACACCAGTAGCTAGCTCGGCCAGATGGCTGGTCAATTGGCCTGCGTTCCTTCTGTGTTCAGAGTGGTCTTGTACATTCCGAAAAAACAACAGGGCACAATAAAAGTACGCCCACTAGTTTGTTTCCCTGTGTAGGTTTACTGAACGAGGAAATTGGCCTGTATGAGGACTAGGGGCATTTTGCATGACTGGAATACAGGTTTAAAAAACCAAATACAACACATTTGTCTCAAggtgtctttcttttctctcaaaTTATTGCAATAgcacactaactgactgacagacagacaagttAAAGGCTG

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0044421 obsolete extracellular region part cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K01357 WNT10; wingless-type MMTV integration site family, member 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008849 True 2943 mRNA 0.53 4 13268534 13273981

Neighbor

gene id symbol gene type direction distance location
AMCG00008851 NA coding downstream 21964 13227621 ~ 13246570 (-)
AMCG00008852 LOC107737517,LOC107593906,LOC107716155,LOC107668344,LOC107581315,LOC108425565 coding downstream 43740 13219924 ~ 13224794 (-)
AMCG00008848 zc3h10,LOC108412311 coding downstream 59987 13206889 ~ 13208547 (-)
AMCG00008850 NA coding downstream 65270 13185439 ~ 13203264 (-)
AMCG00008843 NA coding downstream 87693 13174193 ~ 13180841 (-)
AMCG00008861 NA coding upstream 28731 13302712 ~ 13305069 (-)
AMCG00008859 NA coding upstream 54988 13328969 ~ 13331002 (-)
AMCG00008864 acvr1ba,LOC108275853,LOC107716207,LOC107695803,LOC107708859,LOC107563637,LOC107570552 coding upstream 165941 13439922 ~ 13456129 (-)
AMCG00008865 NA coding upstream 185580 13459561 ~ 13473216 (-)
AMCG00008866 NA coding upstream 206997 13480978 ~ 13487619 (-)
G51948 NA non-coding downstream 10915 13253853 ~ 13257619 (-)
G51947 NA non-coding downstream 52539 13214272 ~ 13215995 (-)
G51946 NA non-coding downstream 55256 13169430 ~ 13213278 (-)
G51950 NA non-coding downstream 57335 13209551 ~ 13211199 (-)
G51875 NA non-coding downstream 245430 13022024 ~ 13023104 (-)
G51965 NA non-coding upstream 25357 13299338 ~ 13300283 (-)
G52019 NA non-coding upstream 99402 13373383 ~ 13455852 (-)
G52041 NA non-coding upstream 164107 13438088 ~ 13439626 (-)
G52131 NA non-coding upstream 497579 13771560 ~ 13776929 (-)
G52157 NA non-coding upstream 549132 13823113 ~ 13830315 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other downstream 6712 13257698 ~ 13261822 (-)
AMCG00008844 NA other downstream 84178 13135732 ~ 13184356 (-)
AMCG00008845 NA other downstream 170600 13090537 ~ 13097934 (-)
G51867 NA other downstream 266646 13000826 ~ 13001888 (-)
G51799 NA other downstream 371400 12895335 ~ 12897134 (-)
G51974 rps26 other upstream 33441 13307422 ~ 13309425 (-)
AMCG00008860 NA other upstream 42886 13316867 ~ 13325227 (-)
G52099 NA other upstream 411354 13685335 ~ 13686737 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 664470 13938451 ~ 13983893 (-)
AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 other upstream 1419849 14693830 ~ 14715322 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G832108 LOC106572675 non-coding NC_048573.1 CM023227.2 65631407 ~ 65632697 (+)