AMCG00008843


Basic Information

Item Value
gene id AMCG00008843
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 13174193 ~ 13180841 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00008843
GCGAAGTGACGCGCCGTGTGAACAGAGCTGCGACTGCGGGGCTGCGAGGTCATCCAGACAGAACTGCCAGAGCGAcctgtgagagtgagtgtgtgcgcaCACATGTCGATGTAACAGCTGTACAGAGAGCAACTGAGAGGCAGAGGAGACACCATGGCGAACTACAATGGAGCTGTGCCTGAAGAAACCATGGAAACAGATGTGAGTCCATTGGAGAATAGGAACCAGGATCAGGACCAGGTCCAGGATGACCCAATGGGCTCACAGCTGGATCTGCAGCCCAAAGCGATAGAGACGGCGCAGCTCTATCTCACTGTGGAATTTCCCCTTGAGCAGGAAGTGCCCACAAGGTGGTCTAAAATGTTAGAGAAATCACTGCAGACATTCTGTGCCAAGGCAATAACTGACTGTGAAGTCATGGCCCTGACGCTGGTGCAGGGCAACCCACAGTGTGCTACTGTGGAGATAGCACCCCCTTCAGCTGTGACCGAGCTGCTGGAGATGAAAACCTTCGAGCTGCAGTTCACCAAGGATTTCAGAGGCCAGTTCAAGGCACACTTCTCCCAGCCTGACACCATGTCACTGCTGCTGAGCACGGCCCCCAAAGATCCACCGCTGTTAAGCGTTACCCCCAGCGCTCCACTGCCGCTCATGGCCACAAGCACGCCACTGGTGAGTGTCCCAGTGTTCCAGATGTGCTTGAATGAAAAATAG

Function

GO: NA

KEGG:

id description
ko04622 RIG-I-like receptor signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00008843 True 714 mRNA 0.55 5 13174193 13180841

Neighbor

gene id symbol gene type direction distance location
AMCG00008846 NA coding downstream 15890 13155497 ~ 13158303 (-)
AMCG00008839 NA coding downstream 127606 13030570 ~ 13046587 (-)
AMCG00008834 cdk4,LOC107747701,LOC107567936,LOC106565448,LOC107701179 coding downstream 204656 12966348 ~ 12969537 (-)
AMCG00008833 NA coding downstream 231957 12926593 ~ 12942236 (-)
AMCG00008832 zbtb39,LOC102796472,LOC106567078 coding downstream 256397 12913536 ~ 12917796 (-)
AMCG00008850 NA coding upstream 4598 13185439 ~ 13203264 (-)
AMCG00008848 zc3h10,LOC108412311 coding upstream 26048 13206889 ~ 13208547 (-)
AMCG00008852 LOC107737517,LOC107593906,LOC107716155,LOC107668344,LOC107581315,LOC108425565 coding upstream 39083 13219924 ~ 13224794 (-)
AMCG00008851 NA coding upstream 46780 13227621 ~ 13246570 (-)
AMCG00008849 NA coding upstream 87693 13268534 ~ 13273981 (-)
G51875 NA non-coding downstream 151089 13022024 ~ 13023104 (-)
G51851 NA non-coding downstream 249537 12923204 ~ 12924656 (-)
G51811 NA non-coding downstream 253402 12920545 ~ 12920791 (-)
G51809 NA non-coding downstream 265860 12907321 ~ 12908333 (-)
G51724 NA non-coding downstream 514076 12657226 ~ 12660117 (-)
G51950 NA non-coding upstream 28710 13209551 ~ 13211199 (-)
G51947 NA non-coding upstream 33431 13214272 ~ 13215995 (-)
G51948 NA non-coding upstream 73012 13253853 ~ 13257619 (-)
G51965 NA non-coding upstream 118497 13299338 ~ 13300283 (-)
G52019 NA non-coding upstream 192542 13373383 ~ 13455852 (-)
AMCG00008845 NA other downstream 76259 13090537 ~ 13097934 (-)
G51867 NA other downstream 172305 13000826 ~ 13001888 (-)
G51799 NA other downstream 277059 12895335 ~ 12897134 (-)
G51797 NA other downstream 282596 12890811 ~ 12891597 (-)
AMCG00008815 NA other downstream 568933 12601291 ~ 12605260 (-)
AMCG00008853 ARF3,arf3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 other upstream 76857 13257698 ~ 13261822 (-)
G51974 rps26 other upstream 126581 13307422 ~ 13309425 (-)
AMCG00008860 NA other upstream 136026 13316867 ~ 13325227 (-)
G52099 NA other upstream 504494 13685335 ~ 13686737 (-)
G52187 ptges3a,ptges3,LOC107745455,LOC107570321,LOC108433158 other upstream 757610 13938451 ~ 13983893 (-)

Expression


Co-expression Network