AMCG00009008


Basic Information

Item Value
gene id AMCG00009008
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18013706 ~ 18022319 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009008
ATGTTCAAACTACCTATTTTCCAGCCGGACAGCCCAGCTCTGAAGAagtctgtgtctctgctgtCCCTGAATACACCCAACAGCAACCGAAAGAGACGGCGTCTGAAAGATACGCTGGTGCAGCTCACTAAGGAGACTGAGATTTCCCCCTTCCCTCCCCGCAAAAGACAGTCTGCAGAGCACTCCCTGTCCATGGGATCACTGCTGGACATCTCCAACACCCCTGACTCAGGAAAGACCCTAGGAGaaaatgtcaagTCCAAAGGCTCCACCCCTGCCCAAATGAAACAATCTGCTCGATGGCAGGTTGCTAAGGAGCTGTACCAGACTGAGAGTAACTACGTAGACATCCTCACGACAGTGTTAGAGGCTGATCTTGAAGAGCTGGTAATCAACTGGTCGGAGGATAAAAGTGTGGGtgacataattttaaaatacTCCAAAGACCTGGTGAAAGCTTACCCTCCCTTTGTCAACTTCTTTGAAATGAGTAAGGAGACGATAGTCAGATGTGAAAAGCTGAAACCTAGGTTTCATGCTTTTTTAAAGGTATAG

Function

GO:

id name namespace
GO:0004329 formate-tetrahydrofolate ligase activity molecular_function

KEGG:

id description
ko03008 Ribosome biogenesis in eukaryotes

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009008 True 555 mRNA 0.48 4 18013706 18022319

Neighbor

gene id symbol gene type direction distance location
AMCG00009010 NA coding upstream 8965 17976034 ~ 18004741 (+)
AMCG00009007 NA coding upstream 98010 17899078 ~ 17915696 (+)
AMCG00009002 LOC103358380 coding upstream 144748 17863809 ~ 17868958 (+)
AMCG00009004 med25,LOC106601541,LOC106601511 coding upstream 168038 17831943 ~ 17845668 (+)
AMCG00009005 NA coding upstream 184323 17819600 ~ 17829383 (+)
AMCG00009006 ect2,LOC107593151 coding downstream 14475 18036794 ~ 18040961 (+)
AMCG00009014 NA coding downstream 196753 18219072 ~ 18220253 (+)
AMCG00009016 rfc4,LOC103355474 coding downstream 339207 18361526 ~ 18374268 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 1838959 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 1916757 19939076 ~ 19949435 (+)
G53366 NA non-coding upstream 129019 17884481 ~ 17884687 (+)
G53358 NA non-coding upstream 139051 17872802 ~ 17874655 (+)
G53353 NA non-coding upstream 141039 17871429 ~ 17872667 (+)
G53354 NA non-coding upstream 142640 17870507 ~ 17871066 (+)
G53352 NA non-coding upstream 143239 17868996 ~ 17870467 (+)
G53406 NA non-coding downstream 55352 18077671 ~ 18077878 (+)
G53409 NA non-coding downstream 61485 18083804 ~ 18084038 (+)
G53410 NA non-coding downstream 61999 18084318 ~ 18084530 (+)
G53414 NA non-coding downstream 73911 18096230 ~ 18098551 (+)
G53415 NA non-coding downstream 76697 18099016 ~ 18099647 (+)
AMCG00009009 NA other upstream 93114 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 283046 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 670030 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 1262908 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 1276207 16731389 ~ 16737499 (+)
G53520 NA other downstream 528453 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 1505578 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 2354476 20376795 ~ 20396356 (+)
G53911 NA other downstream 3145912 21168231 ~ 21168575 (+)
G53915 NA other downstream 3252292 21274611 ~ 21275354 (+)

Expression


Co-expression Network