G53406


Basic Information

Item Value
gene id G53406
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 18077671 ~ 18077878 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU66814
cagacaaataaccaaaaataagaaaatcttATGAAACTATTTCTATACAAATACATCTCCTGTACAAAAGACACTAATAACTTCTTCCTCTCGCAGATATGATCAATACTCCAGTAACACAGGTAAGTGGTTTGAACTCCTCATCCGCTTTCTCACAGCCCGACAACCCCTCCGCTGGCCAGATTGACAGCCGCAGACTGGAAATGAA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU66814 True 208 lncRNA 0.41 1 18077671 18077878

Neighbor

gene id symbol gene type direction distance location
AMCG00009006 ect2,LOC107593151 coding upstream 36710 18036794 ~ 18040961 (+)
AMCG00009008 NA coding upstream 55352 18013706 ~ 18022319 (+)
AMCG00009010 NA coding upstream 72930 17976034 ~ 18004741 (+)
AMCG00009007 NA coding upstream 161975 17899078 ~ 17915696 (+)
AMCG00009002 LOC103358380 coding upstream 208713 17863809 ~ 17868958 (+)
AMCG00009014 NA coding downstream 141194 18219072 ~ 18220253 (+)
AMCG00009016 rfc4,LOC103355474 coding downstream 283648 18361526 ~ 18374268 (+)
AMCG00009026 LOC107550661,LOC107566880 coding downstream 1783400 19861278 ~ 19915906 (+)
AMCG00009025 atp11b coding downstream 1861198 19939076 ~ 19949435 (+)
AMCG00009032 NA coding downstream 2185197 20263075 ~ 20263866 (+)
G53366 NA non-coding upstream 192984 17884481 ~ 17884687 (+)
G53358 NA non-coding upstream 203016 17872802 ~ 17874655 (+)
G53353 NA non-coding upstream 205004 17871429 ~ 17872667 (+)
G53354 NA non-coding upstream 206605 17870507 ~ 17871066 (+)
G53352 NA non-coding upstream 207204 17868996 ~ 17870467 (+)
G53409 NA non-coding downstream 5926 18083804 ~ 18084038 (+)
G53410 NA non-coding downstream 6440 18084318 ~ 18084530 (+)
G53414 NA non-coding downstream 18352 18096230 ~ 18098551 (+)
G53415 NA non-coding downstream 21138 18099016 ~ 18099647 (+)
G53451 LOC100846954 non-coding downstream 281545 18359423 ~ 18398807 (+)
AMCG00009009 NA other upstream 157079 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 347011 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 733995 17330892 ~ 17343676 (+)
AMCG00008986 shank1,LOC108427331 other upstream 1326873 16746687 ~ 16750798 (+)
AMCG00008988 shank1,LOC108427331,LOC103392692 other upstream 1340172 16731389 ~ 16737499 (+)
G53520 NA other downstream 472894 18550772 ~ 18553960 (+)
AMCG00009022 dnajc19,LOC107727073 other downstream 1450019 19527897 ~ 19547507 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 2298917 20376795 ~ 20396356 (+)
G53911 NA other downstream 3090353 21168231 ~ 21168575 (+)
G53915 NA other downstream 3196733 21274611 ~ 21275354 (+)

Expression


Co-expression Network