AMCG00009526


Basic Information

Item Value
gene id AMCG00009526
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 40448819 ~ 40462899 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00009526
GGTAGATCCTGACAATAAGTTGTTGCTCTGAATAAAAGTGTGGTCCTATTCCACAGGTCCCCCTCAGCTCTGAGTGTATCCGCGCCATCATGAAGCTGATGTACTGTCCACACTGCCGGGGAATGCCCTCCGTCAAGCCCTGCACCAACTACTGCAAGAACGTCATGAAGGGCTGCCTGGCCAACCAGGCCGACCTGGACACCGAGTGGCAGAACCTCGTGGAGGCCATGGGAAACATGCAGGAGAACAGTGCTCACTTCACCAGCAAGGTGTTTCAAGCCTGTGGGGAACCTAGAGTTGGTGGCACCCGGAGCTCGGGGGCTGAGGAGAAGAGAAAGCGGGTGAAGAATTCTGCAGATGACAAAAGCACCATCTCCACTGGCATGGGGCTGGAGAAACTGGTCATGGATGTGACTGGGAAGCTAAGGGAGATGCAACAGTACTGGGTGCAGCTTCCCAGCGCAATGTGCAACGACAAGGTAGCGGCAGGTGTCGGCAACGAGGACAAATGCTGGAATGGCATTAACAGGGGAAGGTATCTCCCAGAGGTCATGGGCGATGGCCTGGCCAGTCAGATCAACAATCCAGAGGTGGAGATTGACATCACCAAACCAGACATGACTATTCGCCAGCAGATCATGCAGTTGAAGATCATGACCAACCGTCTGCGAAACGCCTTCAATGGCAACGATGTGGACTTCCAGGACACCAGTGATGATGTCAGTGGCTCGGGGAGCGCCACCTGCCCAGAGGACCTGTGCCCCAGGGGAAGCGGACGCATCGCCATCCCCAACACAGACCGACCGAAGCTGTACGCAATTCCCCCCGAGAACAAGAAGGTCACGGACAACTCGGGAAGCCAGAACCTGCCCTGCACCGcgctcctcctgctcctctcgTTGGCCACGCTGCTCCTCAGGCGGTAATCGGCAGGCGACGGCACCAATCGGGACTGAGTCAGGGAACGGGGTCAGACGGGCATCGGGGCTGGGTGGGTTAGGGGAGGGGCAAAGGGTTGGGCTATTCACTttgccaaaaaaagaaaaacaaaaagaatggaCTACCTTTTatcttggagaaaaaaaaaggaatactacactttcttagtttttttttgtttgtttgttttacttttaatatatgGCACGATTAGAGCTGGTCTTTTGCATCTTTTTATTTCTGGTGTTTGGGTTCTCTGAAAATTCTGTACCTCAGAAgtgtttaaaaagagaaaaaatctaTAGGTACGTATATATCGGATTTTTCGTCTGGCCGAGTTATTTCTGCCTGAGCTTTGACGTAGTGCTGAGCCCAGCTTTTGTTCTTTTCTGCcctttaaaatagattttgggagaatttatttattaaagcaagCACAATTGTCATTTGGTTTTGGATGTGGACATGAACTGGTCgaaatatttatactttagACTCAGACTAACAAAACCTGTACTGTGGCAGTGTAATCAAAATGTTCCTGTAAACGATCTGATTAATATGTAATGATCATTCAGTTTTCTTCCCTTCATCCTTGAAAACAGagtaatactttattttttagttctgataaaaacagaaattacagaTCACAACGATacttgtctctctccctctccctctcggttCAGtattaatgacaacaaaaaacCCGTTTGCTGGTTGATGTGTGAAGGAGAGCCGAAAACTTCAAAGGTCTTTGCTCAGCCCTAGTCATTAGCAGTGGAGAAAGAAGGATGTTCATCCaggcaaatgtattttatggatTATGAGATGCGGAGGGAATACAGGGGTCTATGTCTTATCTGGATTCTCCAGACTTCCGTTTTTTAATAACCCAAACAGTTGCGGACCTAAACGCGTTGCTTCGACTTCAAGGGTTGGTCGGCTACGGGGAACCTCATCGGGATGTACAGTTCAGGGGGGCTGCTCGGTTTATAATCCAAGTAAATCCCAGCTTTGTCAATCACTCATAACAAGTACTCCACTGTTAACCACTTATAAGAGCAAGTCGTCTGTCTGCTTATATTAATTTCTCCTTGTGTTGTATAAATGCTAGGTTTGTTCTATATCAAAATAATTGAGTTTGCCATCAGACAGTTTATTTCTCCACTGTCGGCCCTATTGAGAAGTCAGTGATCATCGATTACGCATCTAATTCACTGCATCCTAACTCAACAACATTCATGTGGGATGAGAAAGATGGAATATATTCTTAATGCagatttttgtactttgttgtGAGAAAGAACTCCtcctgtgtattttttgtttgtttgttgttttgtttcgtttctTTTATATTGTGGGAATGCTAGATGAAGAATTTTATctgtttgtaaaaatgtattctatagAAGACAGTGGCTTGTTATGTCTGTACTCTTGGCGCCGAGAAAACATCTGCCAGGTTGAAAACTGAGAACagagtataaataaatacagaaaaataaatgtatccagtGGGGAAGCAAAAAAGCAATTCCCTTAAAGATCCCTCGCTCTTCTGACAAGTCTTTAACATCCTTGACTTTACGTGGAATCCTAAATGAGGTACATATATATCCATGTAGGGTTCCTGGTTTTCCgtgacatttttatgtattttattcctgtAATTGTCTTTCCACAGAGGGTCTTGAATGCATCCCCAAACCTACCAGATCCATCCTGGCGATCGCCCACATATTAACCCCGCATGCATTCCTGTGCGTATCTATAATGGGGATATCTAGACATTATTTTACCGCGAATTTACGGATCAAAAACATGTCAATGTGAAAGGACTTCCACACATTTTACTAGGAAAAATCCATGGCCTATAAGCTATGTTAGTACAGGCTAGATGGATCAGTGCAACATAATGTCTCTAAACCAAGAGCCctaaatagatttgttttgtaagaTTTCAAAAACGCAATGTAGCCGTGCATATTCAAATCCATCCTCCATGATTTTGGGCCATTCAGAGGCTCCTGCTGTCGGAGAAGTCACAGCAACCTCGAAGATGAAGCCGAATTTGTATCTTTTGACGTTGTTTGTTCCTGCAATCTTGTGTCAATCGTCTGTGACAGAATTTGACAAATGTGTGTGTCGATCTCATTCCACATCTTAATCGTGATAATAGTCATGTTCAAGAACATCTAATTCCAAAACCTATATGTACATAAACAAGGAAAATATCCTGAAGTTTTAGAGTCTTTCAATacagatttgtttctttaatatttgtCCCGGGCAGAGATCGCTAATCGAGGAGATTTAACCATAAAGGCCCTTCTTCCCACACTGATGCCATTAATGCCAGGAATTCACAAAATATATCCTTCTGTGATCCAGGGTTACACAGCAGGTCAAAAGCTACTGCACATTATTAAGGATTTACCCATTCGGGGCTTTAGGAGCTGTGAGCTGAATCTAAAATACAGCCACAAAACTGCACAGAGTAGATAACGCTTGTGCTATTCTGACTCTAAGCCTGACTGTGGCCGTTTGAATGAGCTCATTTAGGTCGATATTGCAAACCGCTGTCACCGAGATGCCCAGGCACTTGACAGCACAACCAAGACCCAGAGTTATTAAGAAAGTGAGAATGTGAGCTGGCGtttgtaatacaaattaactaagaaaaaaactaaagagtCTGTAATATTGTTTACAGTTCGGAGACCTACATTCTTAACAGCTAATGGACGGTTGTTTATGGACAAATggtctcttttctcttttcaaatgtattatctttGGCAAGGCTGGTACTTGGGTGCAAGAGTAAAAGGTAATTTACTTGTAAATACGTGGGAAGTAAGTCCTATTACCCCTCGTAGGTTATAAGCAGAACTTTATGTATTAGTTCTTGGGAAGGATCTGTTTTTCCTCTAAGGCCCAGTGGCTGTTTGATAAGCAGTCAGTCCTGTTGGATGGAATAAGCCATGGAGTTTCATCGAGTGCTGAGTTTGAACACACGTGATTGTAATTCAGAGTACTCTTCTCGAGCCGTTAGTCTGGTTGCACACTGCCTAATGCGTTGAGGTGTCACAATAAATCCGTTAAATGTGCAAGCACAATTACCGAAGAGGAGCAGCACGGCGCATTGTTGAAACACAGGGAAGCTCCGGGCCGTGGCACAGAGGGAATACTGCTCCTGGCAACGGGAGTGATTTGTATTGAACTGCGAACAGCTTGACTGTAGGCCCGTCCCCTGTGAGACCACGCACTTCAAGCTGAAGTATCGCCTCGGCTCCCCACTCGATCCTGTCACAGCCTTCACCCGCCAACAATCGCTGCGAACCAGACCCGAGCTTGATGGTTAACAGTTACAGATAAATGCAGCGTGGAGACACGATTGCTGGACATGAACCACGCTCAGTTTCACAGGATAGTTGGAGCTCTCCCTCCGGTCGCAGTTTCATTTTCCATCAAAGCTGCTTGAACTTGCTCAGAGCATTAGCTGGGCACTGGCACTGCAGGTCAAGAGAGAGAACTTGGCGTCTGTCTGGGCAGTGGGTTAGGGTTCGGATTACTACGTACTTGAAATGATAGTTGTCAGAGTGGCGTATTTCCCCCTATAGGTATGGTGTTAGTCTTTCTGTTATACAATTCTATGAAATAAGAATTAGTGTTAATGAAGAGGTATGAGACTGATTTGCTGTATATGTATGACCACTTAAATGAGTTAACAAGAAGTTAAACCATtgaggaaatgaaagaaaaacaagtaaaacacaaaaatcacaatttCCTCGCTAGGCCAGGACTCTCACACTGAAGTCCACAGGAATCCTGGGATTGTAGGGCAATCCCCATTAAGAGTCTTCAGCTTGTGCTGCTGACATTAAAGGTGGCAAATCCAGATGTATGAGACTGCCAcccccaaaatgtttttttttgtttttcgtaTTGTgtgatgtaaataaatatatttctgagtAAAGCCATAATTCTGGGCTAACTACTTGCGCCGTTGTGTTCCCTCTCTCAAATACAGCACAGTCAGGATGGGTAAAGATGGACTGTCCCTTTCATTTGTCACAGATTCCCTTTCCCTTTCCCCTAAATAGTATTATTTGGCATTAGCAATGTGAATATGCAAAAGACTGGCTACCATACAGTACTACTGCTGCCTCCAGGCACAGGATATCTTTACTGAGTGTCTGCTCAGCTCTGATGAGTTGAGTAAATGAGTTTCCATGCTACAGCCATGCCTTAaggtaatgaaatgcaaaagaaaagccATTTGAGTTGGGTTTTATCTAATGTAACAGGAGATTGGTCAGTTTCCCTAGGTGCCTCCAAAGACCGGtttggctgttttgttttgttttttcaacttGCCGGAGGGACCACAGTTTGATATCCAAACACTGTGCAGCACTGGGGTTTCAATAGCTGTAACTTCACTGCCATTGCAAACATCCTGGTCAATATCACCTGTGCAGATGAAgaggtgtgtttttgtttgtatgttttgttcttctttcaataaacaacaacaacaacacgacAAAACCCCAGATAGATCAGAATGAATATTGTAGACATCTATGCATTTGAATTAATGAGAATataaagtatttgtattatatgcCAGTGGCTGTGCAAATatagtatttattgttttttttatttttattctttaaatctGTACATACCTCCTTGACACCAGATCATCGCCGATTTTTCAATACTATCCTCCTTACGCTGATAGACGTACAGAGTGGAAAAGGTCTTCGTTTGAGGGATCTCTCTTCAAAGAGGGAAATATACATATAACgtcaacaaataaatgaatgagaaaTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00009526 True 5800 mRNA 0.43 6 40448819 40462899

Neighbor

gene id symbol gene type direction distance location
AMCG00009529 NA coding upstream 7222 40436327 ~ 40441597 (+)
AMCG00009530 NA coding upstream 27947 40412213 ~ 40420872 (+)
AMCG00009524 NA coding upstream 228450 40212648 ~ 40220369 (+)
AMCG00009525 LOC106584350,LOC105907042,LOC106599532 coding upstream 245706 40189141 ~ 40203113 (+)
AMCG00009514 rpp21,LOC107653575,LOC107588084 coding upstream 269769 40172966 ~ 40179050 (+)
AMCG00009533 LOC107384019,LOC106568850 coding downstream 144237 40607136 ~ 40608113 (+)
AMCG00009534 LOC106599529,LOC105018039 coding downstream 181495 40644394 ~ 40652818 (+)
AMCG00009535 LOC106599529,LOC106568848,LOC103359190,LOC108430182 coding downstream 214954 40677853 ~ 40694380 (+)
AMCG00009536 LOC104966469,LOC106907045,LOC107600086,LOC103359190 coding downstream 242627 40705526 ~ 40711491 (+)
AMCG00009539 NA coding downstream 591679 41054578 ~ 41067629 (+)
G57544 NA non-coding upstream 105438 40339382 ~ 40343381 (+)
G57523 NA non-coding upstream 289193 40159409 ~ 40159626 (+)
G57457 NA non-coding upstream 415486 40030546 ~ 40033333 (+)
G57428 NA non-coding upstream 505783 39941222 ~ 39943036 (+)
G57401 NA non-coding upstream 573649 39874881 ~ 39875170 (+)
G57597 NA non-coding downstream 366173 40829072 ~ 40829677 (+)
G57599 NA non-coding downstream 470068 40932967 ~ 40933210 (+)
G57690 NA non-coding downstream 1037065 41499964 ~ 41500218 (+)
G57770 NA non-coding downstream 1286656 41749555 ~ 41750144 (+)
G57775 NA non-coding downstream 1353022 41815921 ~ 41817795 (+)
AMCG00009516 NA other upstream 343767 40086474 ~ 40105052 (+)
G57430 NA other upstream 499619 39948006 ~ 39949200 (+)
AMCG00009480 sst1.1,LOC106579799,LOC105009822,LOC107586749,LOC103023622,LOC107582287 other upstream 1011802 39434900 ~ 39437017 (+)
G57105 NA other upstream 1991227 38442255 ~ 38457592 (+)
AMCG00009428 NA other upstream 2832123 37608305 ~ 37616696 (+)
G57604 NA other downstream 527903 40990802 ~ 40994659 (+)
AMCG00009563 camk2n1a,camk2n2,LOC107659987,LOC108443638,LOC107557885,LOC103024774 other downstream 1133330 41596229 ~ 41599124 (+)
G57830 NA other downstream 1573119 42036018 ~ 42078241 (+)
AMCG00009647 NA other downstream 2974091 43436990 ~ 43444420 (+)
G58324 NA other downstream 3470053 43932952 ~ 43935762 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000030_00873074_00886771 GPC1A coding CI01000030 null 871944 ~ 886807 (+)