G81547 (prrc1,LOC107572184)


Basic Information

Item Value
gene id G81547
gene name prrc1,LOC107572184
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 34856340 ~ 34861467 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU101730
attaaatttaacaggAAACACAAATGTTATACGTTTTTTTATTCGCTGTTTTTGCAATTTTGCAATGTCTACATTTGACAAGTCTCCTAGTGAAATCACAAAGTTCAGATCCAGCGAAATgtcctgaaaccctgaaaagtcacttttcataaaatataaataaatgcaagctTGCCCAACCCCTGATGTTCAGGTTTCAGGGTCATTGTAGATCATGGCAATCTAGCTGTAGACATCACTGCACTGAAAAGGATcacatctgaaaaaatataaatgttacaaagCACCTATGTATAAATTAGATATTTAACAgacagataaaataatacagaatacaaagcACGATCTCAGGTTTAATacatggattttaaaatatctacatTTACATGATTATAGATTAGCCAATGATGTTGAAACTGAAAGAGTCAATGCAGCCATTGTTGGAGGGTGTTACTTTATACATTGTAAATGAAAGACTTTGATAACTAGCCATTCCTCCAATATTACGTGCTTAATCAATGCAGATTATGAAGTTATGTCCCAAGTATTCCATTATTCCATTCTTCTTATTCCAAACAACTCCATGATGCAAAACCCAAATCCACCAAATACCAATTCACCTTTCTGCTGAGaaaatcagtaatctcttacctCCTCCAGAGTTGCACAGGACTTCTAAAACTTATTCCTGTACACAAACCGATAGCAGAGCTAGTCCCAATTGAGAGAAAATGGcattatacaaatacagtagatgtatactgtacatatttaacTCGGCAAAAAGTTTACTTAtgctattaattaaaaataagaaatggctGCTGTCCTCTGTGTTTGGTTTATAAATTAGTACTAATCAATTAGTTTAACTATATAGAACTTGGAACGCCTTTTCCCTCCAAGGAATACAATTAGTGCCGAGTTGAAGATTAATAATGACCTGCTTTTTAGTTCACAAACCTTTCCTGCTAAGCTTCAGCAAATCTCCCCAGTAATTGTAGTGCAGAGAACAATCTTTAATATGACATATACTTTTTATAACAGTTTTCCCAGAGTAAAGTGAGCGAAATGATGATCATTATCAATGTGGAAAGCAGAACTCGTTCTTCATGGTCTACCTGATTTCTGTCAAATGTTCATCTGCTACAAGGAGTTTcatatgcattttctttcaggTTTTCCGTGGCTGACATTCAGCGGTGCTCAAGGACTGAAAGGCAAGTTAAAAAGAACAATCTCTTTGGCCTTGAACAGAGAGGACATAGATGGAGGATTCGATCCAGTTATTTTAAACCTGAAAGGGAGTGTCAAAGTCAATCCGCACAATGACATCCCACTCCCACCACGGCCAGAGGACACTTGGAAATCAAACGCATGATCGTATAATGCCTGTTAGGATGAATTCTTCCAAGCatcttcatgttttttcttaaacaggAAGCAACCAAGATGATGGATGGGTCAGTGAAATCTGATCTGAAACCAGTTGCACATGCTTAACGTATCCTACAAAGACAACAGCAGCTGTTCCAGTACAGGACTCCACAGGAGATACAGGACACCACTACCCGAGACAGATGTTGTTGCATCATTTTCTACAGGTTAAACTATATATTGACACaagcagaaatgaaagaaataccACAAGCTTATGAAATTGTCAGTGACAGCAGCGAATTGACATtcccaggaagaaaaaaaaaaaatcagactcaacattttatataaaacaatcactTTGCAGTggttttataaaaacaatgtttaactGAGGGAATCACAAGTTAGACATCTAGTCACGTCCGTGAGCCAATCCTGCAAAATGTACAGATAAGTAAAATTACAGTTCAAGAGGAGCCACCATCATAGGCACAAAAGTTGTCTCGCAAAATTGTCTCGCAGTGGTTTCCATGGAGGAACTCATTGCTCTAGACAAGATACACGGAGACACTTGCAGTTCTGCATTCAAGGGTTTCACACTTCTGCAGCACAATGCCATCAAATAAATGACAACTTGGCTCAAAAAGGGTagcaaataaaaagtgtttactcttagaagaaaaaaagagtggCACATATTcaagaacattttaaagggaTAATATAGTTAACTAGAATGTTAAACTGACTGAAACAGAATACATGTAGGCTATGGATACAGGACAGTATCTTTTCACTGACATTCTCTAACAATATTTGATTAGTTATTTCCCCTCAAAATCACTAAAATGAAATCTAAAAGCAAAGTCTACAAGAACAATCTTCCTTTAAATTACAGTTTAGGATTGAtaatattacttaaaaatagaaaaaagttCTGCTTCAAAGCAGTTAATGATCTTTAGATTTTTATAATTGTCATTTCAGCTGGACACTTAACCGGTTACGTCTAAACACCCTCCACCATCCCAAAGTCTCTTCCTTTACCATTTGAGATTTTTAACTATAATATCACCATAAGATATTATTTGGAGACTGGAGAAGAAGGCTTCTATATAGAACATTAATATTGCAggtagtttgttttaaaacaatataaaggcGCTTTGAATCCCGCCCTCATACAAACTAACAATCCAAAAACCCAGAGGTCATTCACAATTGGacactttccttttcttgttgtCACTCTGAGCTAGCTGATTGAAGGTTCaagaacacatttgtaaatatcaGAAACACAtaagaaaagtaaattaaacacatttaggGGGTGGGGGCAGTATGAAATGATAAACCACTAAATTCTTGTTCTGGGCAAGATGTGAGCAATAAACTGTGCTGCTCGAAACCTCAGGTAAAGGTTTCAGTCACTGGTCTCCAACTCGGCCCCCACAGGGAAGCCCAGGGCACAGCTGAGCTCAGTGCTTGACGCACCTTCATGGGCCAACAGGCATGGCTGCCTCCAGGAAGTAAATCGTACTGACAGATTCAAACGGCACTTTAAAATACTCAACACGCACATCCTGCAAATAGGTTTTAAAAGGATAACTCTGGAAACGGATGTTAACAATATTCTTAtgagtactttttttttttttttacttggatAATAGCGTCATCGACAAACCAACTAAGTTTGAAGGTAtttcaagaaaatattaaataaattccactgaaatgtgtatatataattatataaacaccACTAGGCCTAAACGACaaactgaaatagtttttttatgcattagccaaatgtaaaacatatatgGGCATTCTATCAATTTCAGTGAAGTCAGAATTCACCACTCTTAAATTTCTGAAAGAATTTTAAACCTCAGCCTATGAATCCTTTTAATATTGTTAGCATTTCATCTGACCATGTAACAAGAACCCTGATTGCTTTGGTCTTTATTTTCACCCATCAAAATCCACTGCAGGATGTCCTGGAGCTAATTAAAACCCTTCCAACTGTCCCAGCCTTCAATTTCCCCAGTATATGCTTCATTATGCATCATATTCCCGACTTCACAAATCAAGACTTCAAGCCCTGTAAAGCACATGCCAAAGAGCTTAAGGACATGTTGGTAAAACATGCCATCTTAGATCAAATCAGATTCTCCATTTAAATTCCACTACTTCCTTCTGATCAAAAAGGGGGGCGAGCGAAATTCTGAAGACAGGTTTACATTTCCTTTCTCTTACATAAGCGAATCTATTCACCATGTCTTAAAAGAGCAAGAGGGTTGATCAGTTTACAAAAGattttttaacaacaacaaaaaagaacaagcaGGCAATTGGAATGTTTAGTCTCATAATCATTCAGTGAGATtctaaaatcaataaaaaaaatgtacaaatcgCACTTGGCTTGCACACTGAAGTTCACAACTTCGATTTCATGATGTAGAAAGTAAGCTGATCACACCCCAATGTGTGAATACAGCCAGTCCTTCAGAGACCATTGAgcacaatgtttgtttgtttctcgtTTTGATTGTTAAATGGTCCGGGGAGGAAGCCGTTGTTTGTACATTCCTGCTACGGCTTTGGCCGCGCTGTAGATCATCTGTCTTCGGGACATGCCGGTGAACATGACGTGCCAGTCAGTCCTGCTGACGTGAGGCAAGTTCCTCTCCAATACCTCTCCCACGGTCACCAGCAGGCCAGACCAAGCCAAGTTATAGTCGGGGGGAGTAAGGGACTGGGCCTACATCTGCTGCACGTATTCCAAAGGCACGGGGGTGGCCTGTGTGAAGCTCTCAATGTGAATCCCGTGGCCGGGGTCTTCAAGAATTAGGCAGCCGATGTCAAAC

Function

symbol description
prrc1 Enables protein kinase A regulatory subunit binding activity. Acts upstream of or within activation of protein kinase A activity; epithelial structure maintenance; and somite specification. Located in Golgi apparatus. Is expressed in several structures, including axis; early embryonic cell; gonad; paraxial mesoderm; and tail bud. Orthologous to human PRRC1 (proline rich coiled-coil 1).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU101730 True 4262 lncRNA 0.38 2 34856340 34861467

Neighbor

gene id symbol gene type direction distance location
AMCG00010543 NA coding downstream 89606 34761755 ~ 34766734 (-)
AMCG00010541 NA coding downstream 117276 34723071 ~ 34739064 (-)
AMCG00010542 NA coding downstream 155770 34696493 ~ 34700570 (-)
AMCG00010538 aldh7a1 coding downstream 168250 34679974 ~ 34688090 (-)
AMCG00010536 NA coding downstream 439808 34415528 ~ 34416532 (-)
AMCG00010549 NA coding upstream 147132 35008599 ~ 35082354 (-)
AMCG00010554 NA coding upstream 245760 35107227 ~ 35121150 (-)
AMCG00010561 hint1 coding upstream 608983 35470450 ~ 35474315 (-)
AMCG00010565 ror2 coding upstream 760426 35621893 ~ 35630044 (-)
AMCG00010567 NA coding upstream 795924 35657391 ~ 35684251 (-)
G81520 NA non-coding downstream 134700 34719979 ~ 34721640 (-)
G81485 NA non-coding downstream 183177 34672343 ~ 34673163 (-)
G81340 NA non-coding downstream 992169 33863897 ~ 33864171 (-)
G81287 NA non-coding downstream 1339189 33469977 ~ 33517151 (-)
G81258 NA non-coding downstream 1700994 33154152 ~ 33155346 (-)
G81608 NA non-coding upstream 277896 35139363 ~ 35139923 (-)
G81636 NA non-coding upstream 550059 35411526 ~ 35411738 (-)
G81652 NA non-coding upstream 662213 35523680 ~ 35526769 (-)
G81698 NA non-coding upstream 800609 35662076 ~ 35666678 (-)
G81772 NA non-coding upstream 1125529 35986996 ~ 35990634 (-)
AMCG00010532 ppic,LOC107713556 other downstream 751668 34098346 ~ 34104672 (-)
AMCG00010509 fem1c,LOC106580179 other downstream 1856341 32993287 ~ 32999999 (-)
AMCG00010487 ppip5k2 other downstream 2858646 31954370 ~ 31997694 (-)
AMCG00010478 znf367,LOC107568105,LOC107704585 other downstream 3776018 31072452 ~ 31080322 (-)
AMCG00010458 LOC107396140 other downstream 4335959 30510970 ~ 30520381 (-)
G81716 NA other upstream 853484 35714951 ~ 35716672 (-)
AMCG00010597 ercc8 other upstream 1766434 36627901 ~ 36641693 (-)
AMCG00010602 NA other upstream 1816230 36677697 ~ 36683818 (-)
AMCG00010623 NA other upstream 2544413 37405880 ~ 37408149 (-)
AMCG00010666 NA other upstream 3562012 38423479 ~ 38425067 (-)

Expression


Co-expression Network