AMCG00010532 (ppic,LOC107713556)


Basic Information

Item Value
gene id AMCG00010532
gene name ppic,LOC107713556
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 34098346 ~ 34104672 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010532
GGGACttgttcttgtagcgcagacgTCCGCAGTTCTGGgccgctccaccaatggggtcgctgggattctgcagatctgcgcagacctgcggacatctgcgctacaagaacgcgagcGTCAGCTTTCTTGAGTCAGTCGGCGCTTTGCGGCTTTTTCTCCCACGTCCTTCCTGGAAGAGAAACATGGATCCGAGGAAGGCACTGTTAGTATTCACAGGGCTGTTCTTTTTGGGCGCTTTTTCCCAAGATGTCCTGTGCATGAGGGGGAAGAAGGGACCGAAAGTCACAGCAAAGGTGTTTTTTGACATCCAAGTGGGTGGACATGAGGTTGGACGAATCGTGATTGGCCTGTTTGGAGATGTCGTACCGAAGACTGTGAACAACTTCATAGCACTCGGCACAGGGGAGAAGGGATTTGGCTACAAAGGAAGTAAATTTCACAGAGTAATAAAAGATTTTATGATACAAGGAGGTGACTTCACTGCTGGCGATGGAACTGGAgCTGTCTTTCCCACCAAACTGGCTTCTGTGGTGCACACAATAGAACTGCAAGACACCAATGACAGGAACGTGCCCTATCAGGACTGCGTGATCATAAACAGCGGGAAGATCGAAGTTAAAGAGCCATTCGTCGTCGAAGTGGAGGGCTGGTAGGACGATAACATCAGGAGATATGCAAGCTCAGAAGCTAAATGCACAAAGCAGTTGTATGCTGAAAAAGATCAAATGTTGATGCCACtgaacaatattatttattgataagaAAAAAAGGGCTGACGTGATTTAAACTGTCCGATTCTTTTCTGGACTGTGGTTATCTTTTTCACACAGTTTATATGCAATAACCCCTACAAAATACCACATATGTTATGTATATGCATTTTGTATAGTGTGTAAATGTTGTGTTACGTTTGTGCCTGTATGTAAACCACCCTTGTGGTTCATTAGTCAAACATGCACCTCGTGTAAAAAACAATATCTGATGTATGCAAAGTGACGGGTGCATGACGTGTCCCAGCCAAGTTTAAAAACAGTATTCAGCTGTCAAAGAGAATgtacttacatttatttaacaaataactgccagatatttaaaacaaacaacatgtgTGCACTTTGTAAGAGAGACAGCTCAAGACAGCTTGTGTGTGTAGAGGTTAAATaccactgtattgtattgtattgtattgtatgcacTAGAATTCCTAATACTAGGCACAACTGTAAGTGTCCACACAATATAAATTCAGCCATAACTTCCTCCGTCATTGATAAAATTCATTAACACTTATGTAACATTTACCATCAGTTTCTTTGCAGCTGCCGCTAGTAACTGAGTTAGTGTGCCAATTTCAAATGTTAACACTATCCTGAATCATGATAACTCGCTGCATTCTAGACAAGGAAACGCAATAAAATGATACCAAGC
>TU101543
TTCTCCCACGTCCTTCCTGGAAGAGAAACATGGATCCGAGGAAGGCACTGTTAGTATTCACAGGGCTGTTCTTTTTGGGCGCTTTTTCCCAAGATGTCCTGTGCATGAGGGGGAAGAAGGGACCGAAAGTCACAGCAAAGGTGTTTTTTGACATCCAAGTGGGTGGACATGAGGTTGGACGAATCGTGATTGGCCTGTTTGGAGATGTCGTACCGAAGACTGTGAACAACTTCATAGCACTCGGCACAGGGGAGGCAAGAGCATCTATGGAGTGACATTTGCCGATGAGAACTTCAAGCTGAAGCACTTGGGGACAGGATGGGTCAGCATGGCTAACGCAGGGCCAGACACCAACGGCTCACAGTTCTTCATCACTTCTGCTAAAGCACCCTGGCTGGATGGCAAGCATGTCGTATTTGGAAAGGTCCTTGAAGGAATGTCTGTGGTGCACACAATAGAACTGCAAGACACCAATGACAGGAACGTGCCCTATCAGGACTGCGTGATCATAAACAGCGGGAAGATCGAAGTTAAAGAGCCATTCGTCGTCGAAGTGGAGGGCTGGTAGGACGATAACATCAGGAGATATGCAAGCTCAGAAGCTAAATGCACAAAGCAGTTGTATGCTGAAAAAGATCAAATGTTGATGCCACtgaacaatattatttattgataagaAAAAAAGGGCTGACGTGATTTAAACTGTCCGATTCTTTTCTGGACTGTGGTTATCTTTTTCACACAGTTTATATGCAATAACCCCTACAAAATACCACATATGTTATGTATATGCATTTTGTATAGTGTGTAAATGTTGTGTTACGTTTGTGCCTGTATGTAAACCACCCTTGTGGTTCATTAGTCAAACATGCACCTCGTGTAAAAAACAATATCTGATGTATGCAAAGTGACGGGTGCATGACGTGTCCCAGCCAAGTTTAAAAACAGTATTCAGCTGTCAAAGAGAATgtacttacatttatttaacaaataactgccagatatttaaaacaaacaacatgtgTGCACTTTGTAAGAGAGACAGCTCAAGACAGCTTGTGTGTGTAGAGGTTAAATaccactgtattgtattgtattgtattgtatgcacTAGAATTCCTAATACTAGGCACAACTGTAAGTGTCCACACAATATAAATTCAGCCATAACTTCCTCCGTCATTGATAAAATTCATTAACACTTATGTAACATTTACCATCAGTTTCTTTGCAGCTGCCGCTAGTAACTGAGTTAGTGTGCCAATTTCAAATGTTAACACTATCCTGAATCATGATAACTCGCTGCATTCTAGACAAGGAAACGCAATAAAATGATACCAAGCAAGAActgcattgtgttttaatttgctttattactgtacattgtatccctattttcagatttaataaCTGTACACAAAGTGCTGGAAAACCACACCTCGACAACACGTTTATAGCTATACTCACACTCAACATTTCAAAATTGAATGGAAATGATTATGGTGCATCTAGATGCTAAACAAGTGTCTTGATCTTGTGTGTTCGGTACAGAAAACCTGACTACGACTAGCTGGTGATGGGATTTATTGAACctattttcacaattaaaattcaCTGCTGGAAGAAGACACGTGCCACAGCTTTCGTATGAATACAAATTGGAAGACAATTCAATCTCTAGGAGTTTTCTAGcgttatttttcattcttagTATGATATTTAGTTAGAGGACCTGATATAGCCTTGTCACACatagatttgttgttttcttaaacacagaacaaaatatcAGATTAATTTTGCCACATTACATGACTAAACGTGTCTTTCCAGAAGCAATAACCCTATCAAAGCTCAATTTTTGTCTCTGATCACAAATTAATAGGGTGATATagcaacagaaacacacaaacgaTATTATAAAAGTAGTTtacatgatatattttttcccaaatggATGCTAAGTCAGTCaaacatatttcttatttaaaaaatatagtttttaaataaacatagaCATAGGATACAACGGAGATACTAccttttatattataaaatgtcaGCTCACACTAGTATCTAAGTTTCTCACAGTTATGTCAGTTATTCTAAGTAGTGTTGATTTAACACGTCAGCCATGATTTGCCAGCTGTAAAGTAGTTTCCATACTTTCCCACCAGTATATAGAAACAGCTTTTCATATCTGCTTTAAATGCAGCAATAAATATCTCTTTATAATGGTATAAAATATTCCATGTGACACTTTTCAGTTTGGCTCATATTAGTTCAGCAAACAATCAACTTCTAGAAGTTTGACTCAACAGATTACCTTATTCTGAGTAGCACCAGTCTCATTGCTAGTCTTGGATTATTTCATTAGTCATAGTGCAATACTTTGATAATCCACACATctaaatgtttcaaaacaaaacctttttagTGTTGTAAACTCCCTTTTGTCCAGTTTAAACAACTCTTCATCAGCCTCCATTATTGCATTGTCTATTTTGGTTGAAGATCTGGGTAGAAGATGCCATGAATAACACCTTCAATAACCACGTTT

Function

symbol description
ppic Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to act upstream of or within protein folding and protein peptidyl-prolyl isomerization.

NR:

description
peptidyl-prolyl cis-trans isomerase C

GO:

id name namespace
GO:0044267 cellular protein metabolic process biological_process
GO:0016853 isomerase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010532 False 1428 mRNA 0.43 5 34099563 34104672
TU101543 True 2560 lncRNA 0.38 4 34098346 34104519

Neighbor

gene id symbol gene type direction distance location
AMCG00010521 lox,LOC107562574,LOC107569406,LOC107744154,LOC107713278,LOC103390487 coding downstream 151071 33941820 ~ 33947275 (-)
AMCG00010515 NA coding downstream 602125 33490858 ~ 33496221 (-)
AMCG00010516 dtwd2 coding downstream 624495 33472503 ~ 33473851 (-)
AMCG00010514 sema6a,LOC106585847,LOC106580184 coding downstream 891785 33167473 ~ 33206561 (-)
AMCG00010508 cdo1,LOC102791980 coding downstream 1062406 33026967 ~ 33035940 (-)
AMCG00010531 cep120,zgc:163014,LOC107712640 coding upstream 64642 34169314 ~ 34188983 (-)
AMCG00010535 NA coding upstream 274232 34378904 ~ 34387244 (-)
AMCG00010536 NA coding upstream 310856 34415528 ~ 34416532 (-)
AMCG00010538 aldh7a1 coding upstream 575302 34679974 ~ 34688090 (-)
AMCG00010542 NA coding upstream 591821 34696493 ~ 34700570 (-)
G81340 NA non-coding downstream 234175 33863897 ~ 33864171 (-)
G81287 NA non-coding downstream 581195 33469977 ~ 33517151 (-)
G81258 NA non-coding downstream 943000 33154152 ~ 33155346 (-)
G81157 NA non-coding downstream 1506740 32560011 ~ 32591606 (-)
G81138 NA non-coding downstream 1568135 32525678 ~ 32530211 (-)
G81485 NA non-coding upstream 567671 34672343 ~ 34673163 (-)
G81520 NA non-coding upstream 615307 34719979 ~ 34721640 (-)
G81547 prrc1,LOC107572184 non-coding upstream 751668 34856340 ~ 34861467 (-)
G81608 NA non-coding upstream 1034691 35139363 ~ 35139923 (-)
G81636 NA non-coding upstream 1306854 35411526 ~ 35411738 (-)
AMCG00010509 fem1c,LOC106580179 other downstream 1098347 32993287 ~ 32999999 (-)
AMCG00010487 ppip5k2 other downstream 2100652 31954370 ~ 31997694 (-)
AMCG00010478 znf367,LOC107568105,LOC107704585 other downstream 3018024 31072452 ~ 31080322 (-)
AMCG00010458 LOC107396140 other downstream 3577965 30510970 ~ 30520381 (-)
AMCG00010442 LOC107672760,LOC107738293,LOC107592320 other downstream 4137022 29952690 ~ 29961324 (-)
G81716 NA other upstream 1610279 35714951 ~ 35716672 (-)
AMCG00010597 ercc8 other upstream 2523229 36627901 ~ 36641693 (-)
AMCG00010602 NA other upstream 2573025 36677697 ~ 36683818 (-)
AMCG00010623 NA other upstream 3301208 37405880 ~ 37408149 (-)
AMCG00010666 NA other upstream 4318807 38423479 ~ 38425067 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038654 ppic coding NW_003336991.1 KN150596.1 17881 ~ 29810 (+)