AMCG00010514 (sema6a,LOC106585847,LOC106580184)


Basic Information

Item Value
gene id AMCG00010514
gene name sema6a,LOC106585847,LOC106580184
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030129.1
NCBI id CM030129.1
chromosome length 41163702
location 33167473 ~ 33206561 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010514
aggctAAAGTAAAGAAGTAATCAAGTAAGGAACTAGCTGCGCTACTATGAGGTCTGAGGCCTTGCTGCTATATTTCACACTACTACATATTGCTGGGGCTGGATTCCCAGAAGACTCTGAGCCAATCAGTATTGCACATGGCAACTatacaaaacaatatCCAGCTTTTGTTGGTCACAAACCGGggagaaacaacacacaaaggCATAAACTGGATATCCAGCTGATTCTGATCATGAACAGGACGCTCTACATCGCTGCTAGGGATCATATTTATACAGTTGACATGGACACATCACAcacagaagaaatatattttaacaaaAAATTGACGTGGAAATCAAAACAAGCTGACGTTGACACTTGTAGAATGAAGGGAAAGCATAAGGATGAATGTCACAATTTCATAAAGGTCCTCCTccaacaaaataatgattccttgtttgtgtgtggaaCGAACGCCTTCAACCCATCCTGCAAAACATACAAGATGGATTCCTTGGAACCAATTGGAGAGGAGATCAGTGGAATGGCCCGTTGCCCCTATGatgcaaaacatgcaaatgtCGCCCTGTTTGCAGATGGGAAGCTTTATTCCGCCACGGTAACAGATTTCCTAGCGATCGATGCTGTCATTTATCGAAGCCTTGGAGACAGTCCAACCCTTCGGACAGTCAAGCATGACTCAAAATGGCTGAAAGagccaTACTTTGTACAGGCTGTTAATTATGATGACTACATCTACTTTTTCTTTCGTGAGATTGCTGTGGAGTACAACAGTATGGGAAAGGTTGTTTTCCCCAGAGTGGCCAGGGTGTGTAAGAATGACAGGGGAGGGTCTCAGAGAGTCCTGGAGAAACAATGGACTTCCTTCCTCAAAGCGCGTCTCAACTGCTCGGTCCCGGGGGATTCCCATTTCTACTTTAACATCCTCCAGGCTGTGACCGACGTTATCCAGATTAACGGCCGCGATGTCGTCATGGCAACATTCTCAACACCTTATAACAGCATCCCCGGCTCTGCAGTCTGTGCCTATGATATGGCAGATGTTGCCAATGCTTTTACTGGAAGATTCAAAGAACAGAAGTCCCCCGATTCCACTTGGACACCCGTCCCTGATGAGAGAGTGCCCAAACCAAGGCCTGGATGCTGTGCAGGCTCACCATCACTGGAAAGATACAAAACATCCAACGAATTCCCTGATGACACCttaaatttcattaaaatgcaccCCCTAATGGATGAGGCAGTGTCTTCCATCGCTAACAGACCGTGGTTCCTGAAGACAATGGTTCGATACCGACTCACCCGCATCGCAGTGGACAGTGCAGCAGGACCTTATCAAAATCACACGGTTGTTTTCCTTGGATCGGAGAAGGGAATCATATTAAAATTCCTGGCCAAGATGAGCAGCGGGTTTTTAAATGACAGCCTTTTCCTGGAAGAGTTGAACGTCTACAACCCAGAGAAATGCAGCATCGATGGTGTGGAGGACAAGAGGATTGTTGGTATGCAGTTAGACAAAAAGGGCAATTCAATTTATGTGGCTTTCACATCTTGTGTCGTGAAAGTGCCACTGTCCAGATGTGACCGTCATGGCAAATGCAAGAAGGCATGTATTGCATCACGTGACCCCTATTGTGGATGGGTGAAGGAAGGAGCGTGCACAGAGGTTTTACCTGACACCAAATTGGCATTTGAGCAGGACATCGAGCACGGCAACACAGATGGGCTGGGCGACTGCCAAAatTCTTTTGTGGCCCTGAATGACATTCCAACCAGTCCTCAAGGTCGCGAAAAGTCTCGAAACTCTCTGCAtgGCCACACAGGCTATCCTTTTCTCACCACTTCCCGTTCTCCAGCCAGAGAGGGACCTGAGGGCCGGGGCCGCATGCTCGATCAGAAAGACACCATGGTCTCCTCTGATAAGAAGGACCCGTACATGGCAGGGCCCTCGCATACCCTCCAGGACACTGATGGCGTGATACGGGAGAGTTACCAGAAGGGACGCGATCAGCTCGTTCCCGTCACCCTGTTGGCAATAGCCGTCATCCTGGCCTTTGTGATGGGAGCCATATTCTCTGGCATCATCGTCTACTGTGTGTGCGACCACCGGAGGAGGGATGTGGAGATGGTCCGGCGCAAGGACAAGGACACGGTGCATTCCAGGAGAGGCTCGATGAACAGTGTCACCAAACTAACTGGCCTGTTCGAGACCCAGTCAAAGGAGCCCAAGCCCGAGGCCATCCTCACCCCGCTGATGCATAACGGCAAGATGGGCACGCCCAACGGCACGGCAAAGATGCTCATTAAGGCCGATCAACACCACCTGGACCTTACTGCCCTGCCGACTCCCGAGTCCACGCCCACCTTGCAGCAGAAGCGCAAGCCAAGCCGTGGCAGCCGCGAGTGGGAGAGGAACCAGAACTTGATTAACGCCTGCACGAAAGACCTGCCACCGATGGCTTCTCCAGTGATCCCAACCGATCTCCCTCTCCGGGCATCTCCAGGCCACATTCCCAGTGTTGTGGTCCTCCCCATCACCCAGCAGTCCTATCAGCATGAGTATGTGGACCAGCCCCACCGGGTTGAGATGAACCAGCTTGCAATGGAAGACCAGGGCGCCACATTGGAATATAAGGCTATTAAAGAACACCTAGGCAGTAAGAGTCCCTGCCACGGCCTCAACCTAGTGGAAAACGAATCCATCCCTCCCAGAGTCCCCCAGAGGGAGGCTTCACTGGGGCCCCCCACTGGAGTCCCTCAGATGGGCAAGCGGTTAGAAGTGCACTCCTCGGCATATGGCCATGATTACAAGAGGGGTTACCCCCTGAGCTCTCAGCAGAAAAGCCATCAAGGATCTGCTCTGAAAAAGCACAACACTAACTCCTCAAATTCTTCACACTTGTCAAGAAACCACAGTTTTAACAGGGTGGAAAACCCACCCCCTGCACCTCAGAGAGTTGACTCCATACATATGAATGCTCAAGCGCAGGCCGTGACTGTGTCCAGACAGCCAAGCATGAGCTCCTACAGCTCTCTGCCCAGGACGGGGGTGAAGCGCACAGCTTCCTTAAAGCCTGATGTACCGCCCAAACCCTCGTTAGTTCCCCTCTCCGCAAACATCAAGCCAAATGATGCATGTACATAATTATCATGCGGGAGACAGGGAACACAACTGCATTGACTTTACTGTCTCTTGTCAGTGTACAGCAAATGCaacacaatatttgttttttttatgaggaaaaaaaagttgttgaGCTCAGGATGTTTGCTCTCATTCCCTGGGAAAAGTGGAATATTTTCTGTTGAAACACACAAGCTACAACTGAACAACATGACACCACCACAATAAAGATACACAGCATGTCATCCTTTAATGTTCTAAGAGGTGGCGGCAAAGAATAATACAGCAACCCAATGGATATTTTGTAACAACAGGCCAAAAGCACAATGTTGCATTGAATGTGTAATCACTCTTGTACTGTACAGCGCACTCTCCGCTCAGAGAGACGAGGGGAGGACAGTGCATTGACAAAGCTGGCTCAGGCTAAACAATGGCTGGAGTTGACTGTGTGCAGATAACTGTGAAATGCCTCTCAGTGTTACACCAATTGGTCATCGCAATTTAGTGCTGCTTTGGTCAAGGCTTTGGCCTGAAAACCTGCTACTGGTTACCGAATAACATATGACTGTTAATACTAATAGctccttgtatttattatttaagtgcttttgaaaagaagaaaagactgACTTTTAAGGCTATGAAAAACTCTTGAGACAATTAATCAAgtgtgaaattatttaaagtcAATTAACTGGAGCCagtcaatgtttattttttagcacATGGGTCCACTAACCGTGTGGAGCTGGGGTCTTGAACTTTGTTTGGACTTTCCGATACACATGAATTTTCAGAAAAGGgggaatatttatttaactgtgcCAGGTGGCTGCTGACTGGATCTGGGATCTACAGCATGCAGAAACTCCAAGGTTGAAACTTAAGGAACTACAAAAGGAACTCCTAACCTGCACATCGGTCACACCATTGCTTTCCAACATTCAGTAATATGGCTTTTGTCCGTAGTTGATACTTTCTTAAAAGGCATTGGCTTGTGACGTGCCATCTCATTTCACTTTGcatgtaaaaatgcaaaaaaaaagaacagaataccacaaaaaaaacaaataaaggtgTGATAATCATTTATATGATCCAGCTAtggaaatgcataatttatagTCTTATCACACAGGTTCTTAGTTGGAATACATCTGTGAATAGCCTGTTTTCTTCCACATGTAAATTTGTGCCTTACACCCTGAGTTGTGCATAGTTCTCTAGCTGTTTAATAGGTTTCCtttttagtttggttttattcgattttatttatttttaatttcccttgtctgattaaagcaaataaagaatGTAGATATTATTGTTGTAACTCTGGTCCCTAGACATATTTGGGGGTAGCACCACATCCCCCCTGTTGtggttcatttttaattgtgccaACTATGCGCTTGAACCAACCCCTTGTTGTGCTGGCATTGTAGACAGTGCTGTGGgtggcattgttttttttttaatcatgaagTCCTTTTTTTcatcctcttcttcttcctcacTGTTTGATAACGACTGACAGATGCGAGTTCTTGCTACGGCCTCTGTCGTGTCTGCGTGATGCACTGCTAAATGAAACACTATCTGATTGGCTGCGCTGAAGATAAAAGGCACCGTGACATTTATCATGTAAATTATGAAAATCCCTACCTAGGCAGCAGAGTCAGGCTGGTTCCTGCATTTATGAAAAGCTGCAAAAATAAGGGCAATTTTATTGGTTTcttttatggtttgtttgttttgtttaaaaaaaaaaagaaaaaaagaaaaaaaaa

Function

symbol description
sema6a Predicted to enable semaphorin receptor binding activity. Acts upstream of or within optic vesicle formation. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in anterior neural keel; anterior neural rod; nervous system; optic vesicle; and presumptive neural retina. Orthologous to human SEMA6A (semaphorin 6A).

NR:

description
PREDICTED: semaphorin-6A-like isoform X1

GO: NA

KEGG:

id description
K06842 SEMA6; semaphorin 6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010514 True 4920 mRNA 0.46 19 33167473 33206561

Neighbor

gene id symbol gene type direction distance location
AMCG00010508 cdo1,LOC102791980 coding downstream 131533 33026967 ~ 33035940 (-)
AMCG00010507 tmed7,LOC103042236,LOC108265697,LOC108434811,LOC107663596 coding downstream 155807 33008827 ~ 33011666 (-)
AMCG00010505 NA coding downstream 212606 32950729 ~ 32954867 (-)
AMCG00010506 pggt1b coding downstream 217836 32937710 ~ 32949637 (-)
AMCG00010504 NA coding downstream 231075 32903607 ~ 32936398 (-)
AMCG00010516 dtwd2 coding upstream 265942 33472503 ~ 33473851 (-)
AMCG00010515 NA coding upstream 284297 33490858 ~ 33496221 (-)
AMCG00010521 lox,LOC107562574,LOC107569406,LOC107744154,LOC107713278,LOC103390487 coding upstream 735259 33941820 ~ 33947275 (-)
AMCG00010531 cep120,zgc:163014,LOC107712640 coding upstream 962753 34169314 ~ 34188983 (-)
AMCG00010535 NA coding upstream 1172343 34378904 ~ 34387244 (-)
G81258 NA non-coding downstream 12127 33154152 ~ 33155346 (-)
G81157 NA non-coding downstream 575867 32560011 ~ 32591606 (-)
G81138 NA non-coding downstream 637262 32525678 ~ 32530211 (-)
G81116 NA non-coding downstream 699217 32467875 ~ 32468256 (-)
G80901 NA non-coding downstream 2430079 30734784 ~ 30737394 (-)
G81287 NA non-coding upstream 263416 33469977 ~ 33517151 (-)
G81340 NA non-coding upstream 657336 33863897 ~ 33864171 (-)
G81485 NA non-coding upstream 1465782 34672343 ~ 34673163 (-)
G81520 NA non-coding upstream 1513418 34719979 ~ 34721640 (-)
G81547 prrc1,LOC107572184 non-coding upstream 1649779 34856340 ~ 34861467 (-)
AMCG00010509 fem1c,LOC106580179 other downstream 167474 32993287 ~ 32999999 (-)
AMCG00010487 ppip5k2 other downstream 1169779 31954370 ~ 31997694 (-)
AMCG00010478 znf367,LOC107568105,LOC107704585 other downstream 2087151 31072452 ~ 31080322 (-)
AMCG00010458 LOC107396140 other downstream 2647092 30510970 ~ 30520381 (-)
AMCG00010442 LOC107672760,LOC107738293,LOC107592320 other downstream 3206149 29952690 ~ 29961324 (-)
AMCG00010532 ppic,LOC107713556 other upstream 891785 34098346 ~ 34104672 (-)
G81716 NA other upstream 2508390 35714951 ~ 35716672 (-)
AMCG00010597 ercc8 other upstream 3421340 36627901 ~ 36641693 (-)
AMCG00010602 NA other upstream 3471136 36677697 ~ 36683818 (-)
AMCG00010623 NA other upstream 4199319 37405880 ~ 37408149 (-)

Expression


Co-expression Network