AMCG00010874 (zmpste24,face1,LOC107670834,LOC107654896,LOC102792402)


Basic Information

Item Value
gene id AMCG00010874
gene name zmpste24,face1,LOC107670834,LOC107654896,LOC102792402
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 3172822 ~ 3179031 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00010874
TCGATGGGCGCGGAACGGCTGTGTGGGAACGGCGGTGTTTTAGGTCTGGGCGGGGGACGACAATGACGGGTGCACAGACGGGTTCACATGAATGGAAAGGGGACAGGATAGCATGAGTTGTCATTACTTGCCATTAGAAGCGCATTATTCGAAGCtctgaaaaatacacacatatccAGACCACACTTGTATATATGAAGTAAAGGCCGGCGAATAAAACCTGTCCATCCGAAGATTGCCCGGATTTGAACTTGAAGCCTCTGCAGGAGATCGGGAAGTGCAGCCAGTCGGGGAAGATGCTGCAATTTGTGTCTGAACTTTCTATAGAATATAAAATCTTCTACTCGGTGCTGCTCTTCTCATGGACCGTGTACCTGTGGGAGGCCTACCTGGCGCACAGACAGCGGAAGGTGTACAGGTCCACGTCCCATGTGCCGGTCGAGCTGGGCAAGATCATGGACACGGAGACCTTTGAGAAGTCACGGCTCTACCAGCTGGACAAGAGCACCTTCAGCTTCTGGTCCGGACTGTACTCGGAGATGGAGGGGACGCTAATTCTCCTGTTAGGAGGCATCCCCTTCCTGTGGAGGACGGCTGGGCTGCTCATTGGACGAGCAGGACTGGGACCCGAGTATGAGATTTCCCAGTCTCTCATGTTTCTGTTGCTGGCCACTCTGTTCAGCGCTTTCACTGGCATGCCCTGGAGCATCTACAACACCTTCGTCATCGAGGAGAAGCACGGCTTCAACCAGCAGACGCTGGGCTTTTTCCTGAAGGACGCGGTGAAGAAGTTCCTGGTGACTCAGTGCATCCTGCTACCCGTAACCTCGCTGCTCCTCTACATCATCAAGATCGGGGGCGACTACTTCTTCATCTATGCCTGGCTCTTCACCCTTGCCGTCTCCCTGGTGTTGGTGACCATCTACGCTGATTACATCGCCCCGCTGTTCGACAAGTTCACCCCCCTGCCCGATGGAGACCTGAAGCAGGACATCGAGGCCATGGCGAGGTCCATCGAGTTCCCCCTCACCAAAGTCTACGTGGTGGAAGGCTCCAAGCGCTCGTCCCACAGCAACGCCTACTTCTACGGCTTCTTCAAGAACAAGCGCATCGTGCTCTTCGACACGCTGCTGGAGGACTACTCTCCGCTGAACAAGGCTGGGGAGCCAGAGCCGGAGCACACGGAGGAGAACGACGCTGCCGAGACCAAGGCCAAGCCCAAGAATAAGAAGCAGGGCTGTAATAACCCTGAGGTCCTGGCCGTGCTGGGCCACGAACTGGGCCACTGGAAACTGGGCCACACGGTGAAGAACATCGTCATCAGCCAGATGAACTCCTTCCTGTGCTTCTTCCTCTTCGCGGTTCTGATTGGACGGAAGGAGCTCTTCACCGCCTTTGGATTCCATGACAGCCAGCCCACCCTGATTGGCCTGATGATCATCTTCCAGTTCATCTTCTCTCCTTACAATGAGCTGCTGTCGTTCTGCTTGACGGTTCTCAGTCGCAGGTTCGAGTTCCAGGCGGACACCTTCGCCCGCAACATGGGCAAGGCTTCTGAGCTCTACTCCGCCCTCATCAAGCTCAACAAGGACAACCTCGGCTTCCCAGTGGCCGACTGGCTCTTCTCCACCTGGCACTACTCCCACCCCCCTCTGCTGGAGCGCCTGCGGGCCCTCAGAGGTCCCAAAGAAGACTGACGGCCCCGGAGGAGGGGGCCCCTGCTGGGCTGGGTCTTAAAGGGCTCCCGGAGACTCCTCCAGGTCCTCTGACTTCTCTTCCTCTGGCCATTCCGCACTCTTCtgctctctcttgctctttctctctttctttttaaacttgCTTCACAAGAAAACGTTTCACACATCTCTTAGTTCAATGCACTTCATCGTGGCCGTTCTACGTCTAACcgtggaaaagaaaaaatacccTGGCAGAAGAGTGCTCCTTAAGAAACCCAGGGTCATGTTTTAACTGGTCTCAGTATCGTTTGCCACAGCTAGTTTATCCGCAAAAGAAAAtagtttgatttctgtgttttttccttagatgatgattttttgtttgtttttacattttccttaatTCCATTAATTGGACCGTTAATTCACATATTCCTGTAGATGAATCGAGTCTTTCAATCCCAGCGTTCTTGGCCATTACTTTTAACGCACTCCCCATTCTCTCCCCTGCTTCATGTGTTCGTGTGTTTTATCGAGGAAGAAGAAATGCTAATCCAGTTCAAAACTAAGCACACCGCTAACAAAGATGTGCATAACAGGGATACATTTCATATAATCTTCTAGAAAAAGAACAAATCTTAAGTAACTTATGAGAGATGTTTAAATTTAGACTGAATGACatatctgtactgtattaaatgtatataaagtatAGACCTAAGAATATCCAAATCCCCATATCAGACCTGTGATTTATTTCACAGCCGGTCAGCGTAAATCCACTGAGCCGtatttttatgaagaaatgTTTTGACTGTGCCTGTCAGATAAGAGACGGAAATTCACCTGATCTGAGCAATCGGACGGGGGGTGTGAGGATCTGGGGTGCTATGAGTTTTTAAGTAGTGTTAGGGCTTAtgaaaagttgttttattttcttgtcatttgAAACCCATCTGAAGggttctctcttttttttttttttttaattttgtaaaactggaaaaaaaaagataattgatTTGGCTTTGaaactgtaaatatgtatttaatttggtaacaaaaaaaataacggCGGGGACGACGATTAATGAATAGttatggaatatgtaaaatgagtttttgtttttgtttttggtgccTGCGTTTATCCTGTATGGTGGCGGGGGTTTCGGCCTGTTGTGCGAGAGGGGACGGGCCTGGTGGTGTGTGGCCCTCCCCACATGATGCCCACGCGACGGAGACTCACTCGCCTCCTAACTCTGAATGTTTGAGTTGAAAATAGCTGATGTACTTTTGCAACGTTGTGAATAAAAACTCACAGTCGTA

Function

symbol description
zmpste24 Predicted to enable metalloendopeptidase activity. Predicted to be involved in CAAX-box protein processing. Predicted to act upstream of or within proteolysis. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in connective tissue disease and lethal restrictive dermopathy. Orthologous to human ZMPSTE24 (zinc metallopeptidase STE24).

NR:

description
PREDICTED: CAAX prenyl protease 1 homolog

GO:

id name namespace
GO:0071586 CAAX-box protein processing biological_process
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0004222 metalloendopeptidase activity molecular_function

KEGG:

id description
K06013 STE24; STE24 endopeptidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00010874 True 3008 mRNA 0.49 10 3172822 3179031

Neighbor

gene id symbol gene type direction distance location
AMCG00010875 NA coding upstream 5199 3145114 ~ 3167623 (+)
AMCG00010876 NA coding upstream 44573 3112434 ~ 3128249 (+)
AMCG00010870 NA coding upstream 164531 3004761 ~ 3008291 (+)
AMCG00010869 NA coding upstream 173719 2990631 ~ 2999103 (+)
AMCG00010863 cf191,LOC106605955,LOC105018927,LOC106592819,LOC102308631 coding upstream 183141 2984975 ~ 2989681 (+)
AMCG00010882 LOC104921322 coding downstream 929 3179960 ~ 3182656 (+)
AMCG00010881 LOC106588497,LOC102218321,LOC107094257,LOC103154989 coding downstream 4088 3183119 ~ 3188870 (+)
AMCG00010885 NA coding downstream 98796 3277827 ~ 3283330 (+)
AMCG00010889 NA coding downstream 170725 3349756 ~ 3386357 (+)
AMCG00010890 NA coding downstream 209224 3388255 ~ 3397892 (+)
G102859 NA non-coding upstream 42558 3093934 ~ 3130264 (+)
G102860 NA non-coding upstream 69180 3099921 ~ 3103642 (+)
G102843 NA non-coding upstream 145425 3027068 ~ 3027397 (+)
G102693 NA non-coding upstream 511964 2623606 ~ 2660858 (+)
G102655 NA non-coding upstream 722941 2449200 ~ 2449881 (+)
G102944 NA non-coding downstream 253784 3432815 ~ 3433147 (+)
G102945 NA non-coding downstream 255888 3434919 ~ 3457657 (+)
G102959 NA non-coding downstream 280831 3459862 ~ 3462503 (+)
G103035 NA non-coding downstream 413637 3592668 ~ 3593407 (+)
G103137 pou3f1,LOC107700687,LOC107716828,LOC107755232,LOC107597138 non-coding downstream 1108992 4288023 ~ 4290680 (+)
AMCG00010856 NA other upstream 394789 2769140 ~ 2778033 (+)
AMCG00010854 sh3bgrl3,LOC108273253,LOC106570239,LOC106588618,LOC105933927,LOC107580135 other upstream 410596 2756296 ~ 2762226 (+)
AMCG00010834 NA other upstream 1099580 2070677 ~ 2073242 (+)
AMCG00010832 NA other upstream 1108478 2039514 ~ 2064344 (+)
AMCG00010830 NA other upstream 1208857 1945055 ~ 1963965 (+)
AMCG00010884 NA other downstream 122925 3301956 ~ 3310953 (+)
G102921 NA other downstream 152553 3331584 ~ 3398506 (+)
AMCG00010886 NA other downstream 152688 3331719 ~ 3338416 (+)
AMCG00010888 NA other downstream 242051 3421082 ~ 3428429 (+)
G102947 NA other downstream 257587 3436618 ~ 3443534 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000313_01706521_01713398 ZMPSTE24, FACE1, ZMPSTE24.L coding CI01000313 null 1706521 ~ 1714563 (+)