AMCG00011049 (ldlrap1,arhb,LOC106579967)


Basic Information

Item Value
gene id AMCG00011049
gene name ldlrap1,arhb,LOC106579967
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 8866341 ~ 8886705 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011049
ATGCACTTGTTTACATTTGTGTTCGCCTTtctcctcccccccctcccccactgtgCAGAGCTGCCAGAGAACTGGACAGACACGCGGGAGACCCTCCTGGAGGGCATGGCGTTCAATCTGAAATACCTGGGCATGACTCTGGTGGAGCAGCCGAAGGGTGAGGAgctgtctgctgctgctgtcaagAGGATTGTCGCCACGGCCAAAGCTAGTGGAAAGAAGCTCCAGAAGGTGACTTTAAAAGTGTCCCCTAGAGGAATTATTCTGTACGACAGTGCATCCAATCGGCTAATTGAGAATATATCCATATACAGGATATCATACTGCACAGCTGACAAGATGCATGACAAAGTGTTTGCTTACATTGCACAGAGCCAGCAGAACGAGACCCTCGAATGTCATGCCTTCCTCTGCACTAAAAGAAAAGTGGCACAGGCGGTCACACTGACTGTGGCACAGGCCTTCAGAGTCGCATTTGAGTTCTGGCAGGCAGCCAAAGAAGAGAAGGAGAAGCGAGTGAAATCGGGGTCTGATGGTGAGGTGGCCAGCAGCTCTCAGTCGGAAAGCTCTGCTAGTCTAGCAAGTTTGAAAGGAGGGGAAGTAGCAACTGGAAACCTGCTGGATTTGGAAGAAGGAGCCATTGCAGCATTTGCCAGTGCAGGCGCCAATTCTGGCCACATGGATGACCCCTTTATTGTGCATCGCAGCACCACAGAGAACAACAACTCTGTATGGgaACTCTCCGATGGTTTGGATGAAGCCTTTTCAAGACTCGCTGAGTCTCGAACGAACCCCCAGGTCCTGGACATTGGGGTGACACCTCAGGACTTTAATACTGACGAGTGCCTCTCTCCCACTGACTGGGACAAAGCTGACATGAACGCGGCGGATAGGGACGACATCTTCAGCTTTTGAGGACAACTGAGCCCTCCTGTGGAAGAAGCCAGAGTTGCACGGATGACAATTTTTAAGTCTTCCTTGGAGAGATCACTGCTGTCATCTAGTGGTTTTTAGCTGGGAGGACTGACTGACCCAAAGCCACAAGTTCCAGATTTCTCAGACCAAAGCAATAACCAactattaactttttttttttttttttttttttttaaaacatggagGCTTATTGCAATTGCAGTTTAGGTTCATATTCCaggcagcattttgttttagtttctggTTCAGtgattttgtatatgtattcacttgttttgaaatgtctgtatatatgtaccAAAATcgatgtgcttttttattttatatatatattggaatcTATAATTTATACCACCCtccagtttttttattttttatatacatttggttGAAAGTAAAATTACTTGTTTACCCTACCCACTATAAGTCTTTTAGTTCCCAGAGCAGTTTCAGGGTGTATTTTCAGGGGTTTAAATTTTGTAGTAAgcctaaaaacaaatacaatttcctTATTTTCTATACAGGACAaactatttttgtaaatatgtatgtattgtctgTTTCAGAGGTGCTTCTATTAATTTGGGGATAAATGACATATTCTACCCTAAGAAATTCCTAAGAAGGAAGATTGTTTCAAAGGCACTTTGGTTGAGTAGAGAAGGCTTTAAAAGTTGAGTTAGGATTTCAGAACTAGAAAGGAGAGATTTGTATGGGTCTGAGAAATTTCCgttgcattttttgttgtaaaaGAACATGTGCCATGTTAGTATTTGAAGCACTTGATCGCTCCACTTTCCCTCCGAATGAATCTTGCACAAGGAAATGCACATACTGGGGATCACCGTGAATATCCGAGGACTTGGTGCTTTAAGCGTAAAGAGGTTTTTAAACATGACCGCAATATTTTCGAGTTTTCCTGTTCGTTAATGGATGCAACATCCATCTATAGCAAACTCAATGATGCCAAAAACCTTATTTAGACCAAAAAGCTGTCCTGATGGAGAACCTGTTTCTTCATTAGGTTTGATTAGTGCAAATGTTTTAGCAATTTCTTTggttgcattgttttttaacacaaggTGGGGATTGATCCAGTAACCTATGCATACATTGAACAAAGCACCATTCACCTGTTCAATGAAGGAGTTTTACATTGGaaaagacactttttttttggttt

Function

symbol description
ldlrap1 Enables several functions, including AP-1 adaptor complex binding activity; AP-2 adaptor complex binding activity; and amyloid-beta binding activity. Involved in several processes, including cholesterol homeostasis; low-density lipoprotein particle clearance; and receptor-mediated endocytosis. Located in several cellular components, including basal plasma membrane; cytoplasmic side of plasma membrane; and endosome. Implicated in autosomal recessive hypercholesterolemia.

NR:

description
PREDICTED: low density lipoprotein receptor adapter protein 1 isoform X2

GO: NA

KEGG:

id description
K12474 LDLRAP1, ARH; low density lipoprotein receptor adapter protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011049 True 2119 mRNA 0.42 9 8866341 8886705

Neighbor

gene id symbol gene type direction distance location
AMCG00011046 LOC106589091,LOC103035846,LOC105892259,LOC103143294,LOC108257369,LOC105006285,LOC107691525 coding downstream 130758 8721384 ~ 8735583 (-)
AMCG00011042 NA coding downstream 256089 8587593 ~ 8610252 (-)
AMCG00011040 NA coding downstream 283627 8578631 ~ 8582714 (-)
AMCG00011041 yars,LOC107687080,LOC107724337,LOC107691530 coding downstream 310810 8548833 ~ 8555531 (-)
AMCG00011034 NA coding downstream 401843 8463214 ~ 8464498 (-)
AMCG00011050 tmem57,tmem57a,LOC106610893,LOC107584286,LOC107687072 coding upstream 26736 8913441 ~ 8930598 (-)
AMCG00011052 NA coding upstream 54411 8941116 ~ 8952749 (-)
AMCG00011054 NA coding upstream 79112 8965817 ~ 8970772 (-)
AMCG00011057 clic4 coding upstream 301005 9187710 ~ 9200667 (-)
AMCG00011059 NA coding upstream 352656 9239361 ~ 9249868 (-)
G103999 NA non-coding downstream 55319 8806470 ~ 8811022 (-)
G103929 NA non-coding downstream 403679 8460930 ~ 8462662 (-)
G103903 NA non-coding downstream 523523 8342584 ~ 8342818 (-)
G103900 NA non-coding downstream 524753 8341363 ~ 8341588 (-)
G103893 NA non-coding downstream 698417 8167695 ~ 8167924 (-)
G104054 NA non-coding upstream 78012 8964717 ~ 8965281 (-)
G104055 NA non-coding upstream 78667 8965372 ~ 8965579 (-)
G104098 NA non-coding upstream 351086 9237791 ~ 9265487 (-)
G104126 NA non-coding upstream 523884 9410589 ~ 9412922 (-)
G104272 NA non-coding upstream 1836885 10723590 ~ 10723956 (-)
AMCG00011051 NA other downstream 2290 8819551 ~ 8864051 (-)
G103832 NA other downstream 839310 7938137 ~ 8027031 (-)
AMCG00010988 NA other downstream 2221618 6628570 ~ 6644723 (-)
AMCG00010966 NA other downstream 2892034 5965133 ~ 5974307 (-)
G103395 NA other downstream 3117777 5704770 ~ 5748564 (-)
AMCG00011058 srrm1,LOC107583602,LOC107721297,LOC106579139 other upstream 335563 9222268 ~ 9236228 (-)
AMCG00011084 dlgap3,LOC106933674,LOC106958363 other upstream 714672 9601377 ~ 9619279 (-)
AMCG00011086 NA other upstream 854428 9741133 ~ 9743785 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other upstream 3072533 11959238 ~ 11971002 (-)
AMCG00011140 NA other upstream 3104124 11990829 ~ 11997786 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_014113 ldlrap1a coding NC_007130.7 CM002903.2 29337789 ~ 29363779 (+)
grasscarp (Ctenopharyngodon idella) CI01000054_08937312_08942587 LDLRAP1, LDLRAP1A coding CI01000054 null 8937312 ~ 8942587 (-)