AMCG00011151


Basic Information

Item Value
gene id AMCG00011151
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12388263 ~ 12402070 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011151
ATGGAGCAGGTACCCAGCAGCGGCCCCGGCCCGGCTGCCCCGCCCGTACAGCACGAGCCCATCAGCTTTGGCATCGACCAGATCCTGAGCGGCCCGGACCCGGAGGGCCCCCAGCACAGCAGCGCCCGGAGCGGCTCGgatagtagcagcagcagcagcagtggactGGGGAGcaactgcaacacaaacaacaacaacaacaacaataataacaacaacaacaacaatagcaaCAACACCAGCTCCACCAGCAGCAGCTACCACCTGGGCAGCCCGGCAGGAGCAGCTACGGCTGCCCCATACCCCTCCCTACCCGGCTCTTTCCCTGGCCTCGGCGGCCCGTTTGAGGACTCCAGCGCCTACGGGGTGAACCTGAGCCTGGCGCCCGGTGGGGTGATCCGGGTACCCGCTCACAGACCCCTGCCCGGCGCCGTGCCTCCGCCCATGGCAAGCGCCATGCCCACCGTGCCCGGCTTCGGCAGCCTGAGCTTCCCCTGGATGGAAAACAGTCGCAGATTCGCCAAGGACCGGTTCACAGGTGCCGTGGGAAACGCGCTCCCCGACATCCAGCCCGACACCCCCGCATCCTTCACTTTAATTAACAGGACAGTAGGTTCCGGCCCCAGACTGTGGCAGGCAGCGGCCCTGACTCCATTCACAGTATCCCGGCGGATCGGTCACCCGTACCAGAACCGCACGCCGCCCAAGCGGAAGAAGCCACGCACGTCGTTCTCGCGGGTGCAGATCTGCGAGCTAGAAAAGCGCTTCCACCGGCAGAAGTACCTGGCGAGCGCCGAGCGCGCTGCGCTGGCCAAGACACTGAAGATGACTGATGCGCAGGTCAAGACCTGGTTCCAGAACCGCCGCACTAAGTGGAGGTACATAAAGATTCTTGCCCACCAACCGCCCACCGATCGCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011151 True 921 mRNA 0.64 3 12388263 12402070

Neighbor

gene id symbol gene type direction distance location
AMCG00011149 NA coding downstream 82056 12300785 ~ 12306207 (-)
AMCG00011150 NA coding downstream 112714 12265507 ~ 12275549 (-)
AMCG00011136 NA coding downstream 302835 12071667 ~ 12085428 (-)
AMCG00011139 psmb2,LOC107591978,LOC107592948,LOC107688376 coding downstream 328638 12053638 ~ 12059625 (-)
AMCG00011137 LOC107589451,LOC104962793 coding downstream 354864 12015153 ~ 12033399 (-)
AMCG00011159 NA coding upstream 95277 12497347 ~ 12499099 (-)
AMCG00011154 NA coding upstream 103744 12505814 ~ 12507945 (-)
AMCG00011157 nhp2,LOC107673822,LOC107590037,LOC107684699,LOC107715316,LOC106603897 coding upstream 108754 12510824 ~ 12527131 (-)
AMCG00011156 NA coding upstream 127760 12529830 ~ 12541377 (-)
AMCG00011155 cdc23,LOC107692994,LOC106603039 coding upstream 149138 12551208 ~ 12556643 (-)
G104660 NA non-coding downstream 8596 12375067 ~ 12379667 (-)
G104598 NA non-coding downstream 231532 12156442 ~ 12156731 (-)
G104568 NA non-coding downstream 244141 12076728 ~ 12144122 (-)
G104591 NA non-coding downstream 246248 12135968 ~ 12142015 (-)
G104545 NA non-coding downstream 348887 12039169 ~ 12039376 (-)
G104665 NA non-coding upstream 294 12402364 ~ 12402564 (-)
G104680 NA non-coding upstream 27895 12429965 ~ 12493101 (-)
G104697 NA non-coding upstream 121767 12523837 ~ 12524358 (-)
G104776 NA non-coding upstream 358975 12761045 ~ 12763667 (-)
G104845 NA non-coding upstream 526602 12928672 ~ 12931083 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other downstream 59981 12326097 ~ 12328282 (-)
AMCG00011135 NA other downstream 319184 12066495 ~ 12069079 (-)
AMCG00011140 NA other downstream 390477 11990829 ~ 11997786 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other downstream 417261 11959238 ~ 11971002 (-)
AMCG00011086 NA other downstream 2644478 9741133 ~ 9743785 (-)
AMCG00011152 kcnip1 other upstream 25923 12427993 ~ 12457327 (-)
G104715 NA other upstream 146219 12548289 ~ 12548993 (-)
G104749 NA other upstream 232786 12634856 ~ 12640227 (-)
AMCG00011169 NA other upstream 418955 12821025 ~ 12826880 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 540320 12942390 ~ 12956267 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038555 TLX3 coding NW_003335278.1 KN150265.1 23250 ~ 29871 (-)
grasscarp (Ctenopharyngodon idella) CI01000169_00406892_00410508 NA coding CI01000169 null 406527 ~ 411245 (+)