AMCG00011157 (nhp2,LOC107673822,LOC107590037,LOC107684699,LOC107715316,LOC106603897)


Basic Information

Item Value
gene id AMCG00011157
gene name nhp2,LOC107673822,LOC107590037,LOC107684699,LOC107715316,LOC106603897
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 12510824 ~ 12527131 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011157
GTCTTTGGTAAAGACAGGAAAAAGCTAATCTATGTATTATGTGTCTATGGTTTTAAATAACAGACCGGAAGCGGATGAGGAAGTGACGCTGATTGCGACCCTGCAGGCAGTAACACGTGTTTCGGCAGGGTATATCTAGGCAGTGTGCGCGGTCTCcctgtgtgaaataaatatacaaccGAACTACTAAACAGATTGATAATTAAACCAGTGTGGAAAGGATGACCAAGGTGAAGAaggaggcggcggcggcggcggcggcggcggagTCGGTGCccgaggaggagaaggagagcgGCGGCACGGGCAAGAGCTACGGGGAGCTGGTCGCCAACGTTAACCCCATCGCGCAGCCGCTGGCCTCCCGGAAACTGACCAAGAAACTGTACAAGTGCGTCAAGAAAGCCTCCAAACTGAAGCAGATTCGCAGAGGAGTGAAGGAGGTGCAGAAATTCATTAACAAAGGAGAGAaaggGATTGTGGTGCTGGCGGGAGACACTCTGCCTATCGATGTGTACTGCCATCTGCCAGTGATGTGTGAGGACAGGAGCCTCCCCTACGCCTACATCCCCTCCAAAGTGGACCTGGGTCTGTCTGCCGGTTCCAAGCGGCCCACCTGTGTGATCATGGTGAAGCCGCACTCCGAGTACCAGGAGGCATACGATGAGTGTGTGGAGGAGgtcttcctctcctctcctctgggGTTGGGGTCGTGTGTGACCTTGCTCTGCGTGTGGATTTGGAACGGGGGGGAATGGGGGCAGCTTGTGATCacgtttTCCCTTTTCTTGGATAACTGA

Function

symbol description
nhp2 Predicted to enable box H/ACA snoRNA binding activity. Predicted to be involved in nucleic acid metabolic process. Predicted to act upstream of or within rRNA processing. Predicted to be located in nucleolus. Predicted to be part of box H/ACA snoRNP complex and telomerase holoenzyme complex. Is expressed in several structures, including digestive system; immature eye; midbrain; retina; and segmental plate. Human ortholog(s) of this gene implicated in autosomal recessive dyskeratosis congenita 2. Orthologous to human NHP2 (NHP2 ribonucleoprotein).

NR:

description
PREDICTED: H/ACA ribonucleoprotein complex subunit 2-like protein

GO:

id name namespace
GO:0019013 viral nucleocapsid cellular_component
GO:0005730 nucleolus cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
K11129 NHP2, NOLA2; H/ACA ribonucleoprotein complex subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011157 True 800 mRNA 0.54 6 12510824 12527131

Neighbor

gene id symbol gene type direction distance location
AMCG00011154 NA coding downstream 2879 12505814 ~ 12507945 (-)
AMCG00011159 NA coding downstream 11725 12497347 ~ 12499099 (-)
AMCG00011151 NA coding downstream 108754 12388263 ~ 12402070 (-)
AMCG00011149 NA coding downstream 204617 12300785 ~ 12306207 (-)
AMCG00011150 NA coding downstream 235275 12265507 ~ 12275549 (-)
AMCG00011156 NA coding upstream 2699 12529830 ~ 12541377 (-)
AMCG00011155 cdc23,LOC107692994,LOC106603039 coding upstream 24077 12551208 ~ 12556643 (-)
AMCG00011166 NA coding upstream 54974 12582105 ~ 12595413 (-)
AMCG00011167 NA coding upstream 69003 12596134 ~ 12605644 (-)
AMCG00011170 NA coding upstream 288296 12815427 ~ 12819344 (-)
G104680 NA non-coding downstream 17723 12429965 ~ 12493101 (-)
G104665 NA non-coding downstream 108260 12402364 ~ 12402564 (-)
G104660 NA non-coding downstream 131157 12375067 ~ 12379667 (-)
G104598 NA non-coding downstream 354093 12156442 ~ 12156731 (-)
G104591 NA non-coding downstream 368809 12135968 ~ 12142015 (-)
G104776 NA non-coding upstream 233914 12761045 ~ 12763667 (-)
G104845 NA non-coding upstream 401541 12928672 ~ 12931083 (-)
G104846 NA non-coding upstream 408351 12935482 ~ 12940160 (-)
G104915 NA non-coding upstream 849002 13376133 ~ 13376997 (-)
G104916 NA non-coding upstream 850926 13378057 ~ 13378299 (-)
AMCG00011152 kcnip1 other downstream 53497 12427993 ~ 12457327 (-)
G104629 LOC100194717,LOC107660902,LOC107754487,LOC107655673 other downstream 182542 12326097 ~ 12328282 (-)
AMCG00011135 NA other downstream 441745 12066495 ~ 12069079 (-)
AMCG00011140 NA other downstream 513038 11990829 ~ 11997786 (-)
AMCG00011125 eef1a1l2,LOC107589444,LOC107706209,LOC107654701,LOC100136525,LOC105027913 other downstream 539822 11959238 ~ 11971002 (-)
G104715 NA other upstream 21158 12548289 ~ 12548993 (-)
G104749 NA other upstream 107725 12634856 ~ 12640227 (-)
AMCG00011169 NA other upstream 293894 12821025 ~ 12826880 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other upstream 415259 12942390 ~ 12956267 (-)
G104909 NA other upstream 837952 13365083 ~ 13367074 (-)

Expression


Co-expression Network