G104909


Basic Information

Item Value
gene id G104909
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13365083 ~ 13367074 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131202
CTTTTCCCCTTTGAAGCAGTttgagcacagagcacaggagACACGCACTTGTTTAAATTTGATGCTTCAATTTATTTAGACAttcagttttgtaaaataaaaaccagatTTCAGACAAATTCATTCGCTGATCACGACTGAGATTTGATCTGAATTCAGCATTCACAGATTAACATCATgtaaatttaatataaaaaaaaaaaatggaaaaaaaattcaccataataaaaatagaatgtaATCTGGATTAGGGCATCTTTGTCTCtccagcagaaaaacaaatcccttcATTCAAGACTACAATTCAAATGATAAgatacaaaaggaaaaaggtCTACAGAAGCCATGATGGATGTAAAAGCTACACACACCATCAGCCACTGCTCTTCCATTCAAGGAACTGTGAGCAAGATGTATCCAATTACtacaaagtaataataaaaatggcattTGCCAAGTTTGTtcatacattgttttatgtattcattctcACAAATGCAATTAATGCCAAAATAATACTGTCCAAGTCAATTCTATACTGAAATAAGTTCTCTTGCTTGCACCAGTTTAATCCATGGTCATAAGCTCTTCCCACTTCTACCCATAGAGGGCACCAAAGTGTTCATATAAGCTTCAGCCCACTTCCCTTTACCTGGCGCTGCATTAACACTATCATATATCAAACCCCCCttatttctattatatatatatatatgtgtgtatgtatgtttgttttgttttcctcacacacaccaaagaaaaatatttggtACCTGACAAGACAACTTTGGAGCATTGCTATAAATTACATTAGTGCAAATGCAGTGgcattatacatgtatatacatatacactatatatgtgtgtgtatacattcacacatacatatatatgcatacacgatgtgtgtgtgtgtatattatatatatatatacatacatacatacacacacacacacatatatatatatatatatacatacatacacacaggtatgtgtgtgtgtgtgtatacatatatagattaaaaaaaaaaaaaatctaatacaaGACAGTGAGAGCGTGCTAGCCTAAGCGTGCTTAAAGCTTCTAGTTCACCAAATGTTCAGTCTCTTTCTGTCTGATATGGAGTATTCCTCATATTTAGTCAATTATCATCATGTTATTTTACCCAGTAACTGGCCCTTCCTTTAACAGTCATAATGTAGGCTTAACTCCCTGGGAGGGATCCTGTGAGAGCTGGAAGGGTCTGGGGAGAAGGAAAGGTGTTATTCAGTAACTTCCATCCTGCAAAACTCCCCACTCTTAATGGCCGCTGCCTGCGTTGTGACAGAGGGGGTGTCGGCCCCCAGTCTACAGCGGACGCTCCCTCAGAGTCCCTGTGCCGAGGGAGTGGCCAGCCCCTGAGCTGCCCCCTGGGGGGACCCCGGAGGCCCACTGCCCAGCTCATGTCCGGCAGGGTGAGGGCTGGGCATGGGCGGTCGACAATTCTGGGGGACTCCTCGGTGGGCTGTCCGAGAAGGATCCAGCCCTCCCCAGCCCTCGCCCACAGCGCCACACTGGCCGCCCACAGCGCCACACTGGCTGCCCACCTCCTCAGAACTGTCCGATCCGGGGTCCAAGTGCACAGAGGGAGGCTGGCAGCCTGCGGCTTGTCCCTCAGGATGCTTGGTGTCTCCTGTGGGTGTGGGGGAAGGCCCAGTGCTGCCCTCTCTCACAGAGTCCCTCTCTCCTTGGGCTGCATGGTCCTCTGGGGCAGGCTGTACTGGCCCATCCTCCCCTTGATTGTGATTGGCAGGTTCCTGTGCTGCCGGTGCCAGCTCCTGGGGGGGCACATTGGTCACGGAGGTCTGTGATTGGCCCTTGAGCTGGCTGTGACAGAGGGGGCAGGTCTCTTGCACATAGAGCCACTTCTTGAGGCAGCCAGCATGGAAGAGGTGACTGCAGGGAGTGATCACAGCTGACTTCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131202 True 1971 TUCP 0.45 2 13365083 13367074

Neighbor

gene id symbol gene type direction distance location
AMCG00011188 ublcp1,LOC106567438,LOC106603889,LOC107672805 coding downstream 21619 13328493 ~ 13343464 (-)
AMCG00011183 NA coding downstream 172943 13186948 ~ 13192140 (-)
AMCG00011182 NA coding downstream 260528 13056733 ~ 13104555 (-)
AMCG00011179 NA coding downstream 330964 13019906 ~ 13034119 (-)
AMCG00011180 NA coding downstream 351732 13004538 ~ 13013351 (-)
AMCG00011194 NA coding upstream 317560 13684634 ~ 13687704 (-)
AMCG00011200 NA coding upstream 376844 13743918 ~ 13745225 (-)
AMCG00011198 LOC105011263,LOC107750325,LOC107677389,LOC107587064 coding upstream 385479 13752553 ~ 13778757 (-)
AMCG00011203 NA coding upstream 489783 13856857 ~ 13858270 (-)
AMCG00011208 NA coding upstream 552594 13919668 ~ 13922667 (-)
G104846 NA non-coding downstream 424923 12935482 ~ 12940160 (-)
G104845 NA non-coding downstream 434000 12928672 ~ 12931083 (-)
G104776 NA non-coding downstream 601416 12761045 ~ 12763667 (-)
G104697 NA non-coding downstream 840725 12523837 ~ 12524358 (-)
G104680 NA non-coding downstream 871982 12429965 ~ 12493101 (-)
G104915 NA non-coding upstream 9059 13376133 ~ 13376997 (-)
G104916 NA non-coding upstream 10983 13378057 ~ 13378299 (-)
G104921 NA non-coding upstream 186366 13553440 ~ 13555074 (-)
G104928 clint1a,LOC108441628 non-coding upstream 295112 13662186 ~ 13667716 (-)
G104998 rpl26l1,rl26,LOC105024418,LOC107381811,LOC100708525,LOC103144500 non-coding upstream 497447 13864521 ~ 13867615 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 408816 12942390 ~ 12956267 (-)
AMCG00011169 NA other downstream 538203 12821025 ~ 12826880 (-)
G104749 NA other downstream 724856 12634856 ~ 12640227 (-)
G104715 NA other downstream 816090 12548289 ~ 12548993 (-)
AMCG00011152 kcnip1 other downstream 907756 12427993 ~ 12457327 (-)
G104929 NA other upstream 298721 13665795 ~ 13679262 (-)
AMCG00011211 NA other upstream 626909 13993983 ~ 13996589 (-)
G105050 NA other upstream 700141 14067215 ~ 14068561 (-)
G105290 LOC108429417 other upstream 2003328 15370402 ~ 15373179 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other upstream 2132460 15499534 ~ 15515675 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G115329 NA non-coding NC_047601.1 CM018547.1 14785329 ~ 14786018 (-)