AMCG00011198 (LOC105011263,LOC107750325,LOC107677389,LOC107587064)


Basic Information

Item Value
gene id AMCG00011198
gene name LOC105011263,LOC107750325,LOC107677389,LOC107587064
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 13752553 ~ 13778757 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00011198
ACTGGGAAACATGGCCTTGGCATAGGAGTCTCATTAGCTACCCAGCGTGcTGATGAACTTTCTAATTATACTAAAGCTAATGCTGACATCATCTCCACCGTTGAGTTCAACCACACGGGGGAGCTCTTAGCGACGGGGGACAAAGGAGGGAGAGTGGTTGTGTTccagagagaacaggagAGTAAGAACCAGCCACACCGGAGAGGGGAGTACAATGTTTACAGCACCTTTCAGAGCCACGAGCCGGAGTTTGACTACCTGAAGAGCCTGGAGATAGAGGAGAAGATCAACAAGATCCGATGGCTCCCACAGCAGAACGCTGCCTACTTCCTACTCTCCACCAATGGTACATGGGGTGGGGCGGATAAAACCGTGCCCGTGCTTCAGCCCATGGACCTCATGGTGGAGGCCATGCCCAGACGGGTGTTCTCCAACGCCCACACCTACCACATCAACTCCATCTCCGTCAACTCCGACTACGAGACCTACATGTCCGCCGATGACCTGAGAATAAACCTATGGAACCTGGAGATCACCAATCGCAGCTTCAACATTGTGGACATCAAGCCGACCAACATGGAGGAGCTGACGGAGGTGATCACAGCGGCCGAGTTCCACCCCAACCAGTGCAACACCttgGAGCCTGAGGACCCCAGCAACCGGTCGTTTTTCTCCGAAATCATCTCCTCCATCTCAGATGTGAAGTTCAGTCACAACGGGCGCTACCTGATGACCCGGGACTACCTCACGGTGAAGGTGTGGGACCTCAACATGGAGAGCAAGCCCCTGGAGACCTACCAGGTGCACGACTACCTGCGGAGCAAACTGTGCTCGCTGTACGAGAACGACTGCATCTTCGACAAGTTTGAATGTGTCTGGAACGGGTCTGACAGCGTGATCATGACAGGCTCGTACAACAACTTCTTCCGGATGTTCGACCGCAACACAAAGCGCGACGTGACCTTGGAAGCATCCCGGGAGAACAGCAAGCCGCGCGCCATCCTGAAGCCGCGCAAGGTGTGCGTGGGTGGCAAGCGGCGCAAGGACGAGATCAGCGTGGACAGCCTGGACTTCAGCAAGAAGATCCTGCACACTGCCTGGCACCCCACAGAGAACATCATCGCCGTGGCCGCCACCAACAACCTGTACATCTTCCAGGACAAGGTCAAC

Function

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00011198 True 1170 mRNA 0.55 10 13752553 13778757

Neighbor

gene id symbol gene type direction distance location
AMCG00011200 NA coding downstream 7328 13743918 ~ 13745225 (-)
AMCG00011194 NA coding downstream 64849 13684634 ~ 13687704 (-)
AMCG00011188 ublcp1,LOC106567438,LOC106603889,LOC107672805 coding downstream 409089 13328493 ~ 13343464 (-)
AMCG00011183 NA coding downstream 560413 13186948 ~ 13192140 (-)
AMCG00011182 NA coding downstream 647998 13056733 ~ 13104555 (-)
AMCG00011203 NA coding upstream 78100 13856857 ~ 13858270 (-)
AMCG00011208 NA coding upstream 140911 13919668 ~ 13922667 (-)
AMCG00011207 stc2 coding upstream 160602 13939359 ~ 13946548 (-)
AMCG00011216 LOC107713182,LOC107587250,LOC107684217,LOC107581908,LOC107661723,LOC108429399,LOC107727287 coding upstream 432868 14211625 ~ 14340740 (-)
AMCG00011222 stk32a,LOC107692947,LOC108414397,LOC107713578 coding upstream 686400 14465157 ~ 14467077 (-)
G104928 clint1a,LOC108441628 non-coding downstream 84837 13662186 ~ 13667716 (-)
G104921 NA non-coding downstream 197479 13553440 ~ 13555074 (-)
G104916 NA non-coding downstream 374254 13378057 ~ 13378299 (-)
G104915 NA non-coding downstream 375556 13376133 ~ 13376997 (-)
G104846 NA non-coding downstream 812393 12935482 ~ 12940160 (-)
G104998 rpl26l1,rl26,LOC105024418,LOC107381811,LOC100708525,LOC103144500 non-coding upstream 85764 13864521 ~ 13867615 (-)
G105048 NA non-coding upstream 286584 14065341 ~ 14065908 (-)
G105052 NA non-coding upstream 291647 14070404 ~ 14070969 (-)
G105077 LOC106567452,LOC106603868,LOC105011253 non-coding upstream 420070 14198827 ~ 14203536 (-)
G105080 NA non-coding upstream 440198 14218955 ~ 14261910 (-)
G104929 NA other downstream 73291 13665795 ~ 13679262 (-)
G104909 NA other downstream 385479 13365083 ~ 13367074 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 796286 12942390 ~ 12956267 (-)
AMCG00011169 NA other downstream 925673 12821025 ~ 12826880 (-)
G104749 NA other downstream 1112326 12634856 ~ 12640227 (-)
AMCG00011211 NA other upstream 215226 13993983 ~ 13996589 (-)
G105050 NA other upstream 288458 14067215 ~ 14068561 (-)
G105290 LOC108429417 other upstream 1591645 15370402 ~ 15373179 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other upstream 1720777 15499534 ~ 15515675 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other upstream 2184581 15963338 ~ 15973872 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_008191 ppp2r2ca coding NC_007125.7 CM002898.2 52522717 ~ 52552875 (-)
grasscarp (Ctenopharyngodon idella) CI01000040_04063098_04068134 PPP2R2B coding CI01000040 null 4062947 ~ 4068198 (+)