G105249


Basic Information

Item Value
gene id G105249
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030133.1
NCBI id CM030133.1
chromosome length 32682731
location 15233703 ~ 15300851 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU131635
taataatgaataatNNNNNNNNNNNNNccccccccccccctttccagcaaagcaaaacatttgaaatgcacgATTAGGGTAAACTTACAAAACGGGCAACTGCAGATTTAATTGTGAATTGGACAGTCTTTAGGTTGTCTTGATACCCCCCTGCAGTATTTTTCCAAAGAAGGTGTTCCTGAGAAGTGCTAAAACGTTGTGCTTTTTGTGGTGCTTCTGGCTCATTAATTCAAAGCACTTCTAGGACAACTTTTAATcccaacataaaaaaacaaggcaaacTAAAACGAGCCTCCAGGGATAAAAAAGGACACAGTTCATATTGAGGTTTAAATGTGAAGTgattgaaactgaaattgaTTCTAATTGCGGCATTTGCACATTTTGAGAAGTATTTTGCTATAATTACTTAATGCAGTGAAAGACGCGTTTtcttttgacattttctgttcaACCCTTGTTTATGGGTTGGAAATGAACCAGTTGTATGGTATTCCTGAGCATTTACCTTTACGTCTGACAAAAGGtggctttcattttctttcaatgcgttaatgtttttgaaaaagctCACGGAGGAACAGGCAGGGGAAACCCTGAATGTCAGTGGATGAAGGCttgcatttgtgtatgtatgttctcaGTTTAATCGGCACCgtgttttaatgtatgaatactTGGCACTGGTGATGGTTTAAAAGCAATAAAGTATTGAACCACCTAGGTCCTCAGTCCACTATGtggaagaggagggagaagggTTTTGTGATGACTTTAAAATCGTGAACCAAGAAATCGGGCCCAAAACCCTTACACTTCCAATCTAGGTAGCTGAACAATCGTAATGCACACTCCTACCCGAGGTTACTGtaacttattttttccttttctttccttcctgaAGTTGAGGAACTTATCCTTAATCTATATTTTTTGATCGAGCATGTACAGCCGATTTGTGGCCTACATCTCTTCACAAGTGCCCCGGTTTAATTAatggtttgtatttctgttctaGACCTTAACTACTTAAACAACCTGTTCTGGAGCACTTGAATCAAATCATGAAAAACTTGCTGGGCATAGTGCCATTTTAAGAagtcaatttcaattaaaggcTACATGCAAATGGTAACACATTCACTACTTATAGCATGTAGGTCACCCTTTATTTGATTACTTAAAACTGCATTGTcaaatgttacaatattgtATTAGGCATTCTTAAAACTGAAATGCGTATGGCTTAACGAATTGCAGAAAAGGTCTGTACTCTGCTTATTCATTGTTTCAAGCTGTGTTTTGGTGATAGTTTGAAAATTGTGGGATTTATGGATGTGGTACTTCTTGGAGACATGgcatacatttctaaaattgaTACTTTCTATCCTGCCTTCGTTCAGTATATGAACTAAGCCCTCACTGgccacatatatacatttagaatttagtgattttgtaaaaataaatgccccCTTCAGAATTTAACACACTGAATGCAAAGTGGAGCAAATACTGCTTTACTTCTAAATTTTCTATACTGTCATGGCAGGTTGTTACCATTGATCCATCAAATACCACTTTCAATTTCTTTGTAAGATGCAGTACTGAGTGAAAATGGTTTCTACTGTGAGAAATAAGACTGTAGAGTGCTTTTGTGCGCTTCATTTCTCGAGGACTGCAATCTGACTACTTTTTTCCAAGATTTGACctttcaataaaatgttattgaaatgtatgaacCTGGTTTGTGTTTATTCCAGCAGTTAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131635 True 1772 lncRNA 0.37 2 15233703 15300851

Neighbor

gene id symbol gene type direction distance location
AMCG00011239 NA coding downstream 103660 15080384 ~ 15130043 (-)
AMCG00011233 gabrb2l,LOC106567507,LOC105011225,LOC107661674,LOC107578857 coding downstream 343398 14884434 ~ 14890305 (-)
AMCG00011232 LOC103038806,LOC108413784,LOC107661674,LOC105011225,LOC106567507 coding downstream 400061 14823524 ~ 14833642 (-)
AMCG00011229 NA coding downstream 532274 14688179 ~ 14701429 (-)
AMCG00011231 NA coding downstream 557279 14649378 ~ 14676424 (-)
AMCG00011246 NA coding upstream 27485 15328336 ~ 15346964 (-)
AMCG00011244 NA coding upstream 60465 15361316 ~ 15364890 (-)
AMCG00011248 NA coding upstream 142339 15443190 ~ 15444125 (-)
AMCG00011261 NA coding upstream 501622 15802473 ~ 15937457 (-)
AMCG00011260 NA coding upstream 674180 15975031 ~ 15977007 (-)
G105221 NA non-coding downstream 114270 15119207 ~ 15119433 (-)
G105213 NA non-coding downstream 178886 15054416 ~ 15054817 (-)
G105187 NA non-coding downstream 304654 14928801 ~ 14929049 (-)
G105176 NA non-coding downstream 344266 14889226 ~ 14889437 (-)
G105112 NA non-coding downstream 783922 14447338 ~ 14449781 (-)
G105291 NA non-coding upstream 72496 15373347 ~ 15374763 (-)
G105282 NA non-coding upstream 84865 15385716 ~ 15404233 (-)
G105298 NA non-coding upstream 90881 15391732 ~ 15396392 (-)
G105326 NA non-coding upstream 234519 15535370 ~ 15569124 (-)
G105427 sar1b,LOC106940938,LOC107657201 non-coding upstream 731400 16032251 ~ 16035023 (-)
G105050 NA other downstream 1165142 14067215 ~ 14068561 (-)
AMCG00011211 NA other downstream 1237114 13993983 ~ 13996589 (-)
G104929 NA other downstream 1554441 13665795 ~ 13679262 (-)
G104909 NA other downstream 1866629 13365083 ~ 13367074 (-)
AMCG00011174 slc23a1,pwwp2a,LOC106603911,LOC102781148 other downstream 2277436 12942390 ~ 12956267 (-)
G105290 LOC108429417 other upstream 69551 15370402 ~ 15373179 (-)
AMCG00011251 gfpt2,LOC106611946,LOC105024910,LOC108240504,LOC107375897 other upstream 198683 15499534 ~ 15515675 (-)
AMCG00011259 pcbd2,LOC107386701,LOC105890513,LOC106941140,LOC103129816 other upstream 662487 15963338 ~ 15973872 (-)
AMCG00011271 LOC107562913 other upstream 742520 16043371 ~ 16098179 (-)
AMCG00011290 rbm27,LOC106567487 other upstream 1643081 16943932 ~ 16961069 (-)

Expression


Co-expression Network