AMCG00012017


Basic Information

Item Value
gene id AMCG00012017
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 8703782 ~ 8710771 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012017
TGTATTTGAAATGGCGTGCTCAAAGGCAGATGACTCTCTGGAAGGAGAGCTGACCTGTCCGGTGTGTCTGGACATCTTCAGGGACCCTCACCTGCTGTCCTGCGGACACAACTTCtgtctgcagtgtgtgcaggAGCTGAAAAAACAGGAAGGTGTGCTGAAGTGCCCAGAGTGCAGGAAGAAACACGGCTCTAATCCCCAGCTGCAGAAGAACTTCAAGCTGGCCAACATTTCTGAGGACTACAGGAGGAGAAGCAAGTCCCCAAAGCATCCCACTGCTGTCCTCTGCGATTCTTGTCTGGAGCGAAATGTTGCAGTCAAGACCTGTCTGAAATGCGAGGTGTCCATGTGTTCAGAGCACCTGAAGCCACACCTAGAGAGACCGGCATACAGAGACCACGCCCTCGTTGTACCCATGGCCAACATTAGGAAGAGAAAATGTCCAGATCACGATGAGACTTTCAAGTATTACTGCCTGGATGAGAGGGTGTACCTGTGCAATGCCTGCACAGTAGAAGGGAATCATGCTGGACACAATGTGAAGACAATGACGAATGTAATGAAAGACCTTCAGGTCACCCTGCAGGCTCAGATGAGGAAGGCAGATAAAAAAGAATCAAAAATAGAGAAGTCATTGAGTGGCTGCAATGAATTTGAACAAGAGATGACAaacattctCGAGGGAGGTGAACAAACAATAGAGAAACTCAGAGAAGTTCTGATGGAAAAGTTGGATGAATTTTTATCCAGAGCAAGAGAATGCTTTCTGAGTCAATGTCAGGACATGACCAATGAAATGAATAAGAATCAAAGTAAAGTAATTGAGGATAAGAAACAAATTGCAGAAACCAAGGACAGGATTGACTCCCTTCTCAAAGAAAATGACCCTTTCCAATTCATTGAggagtACAATCGCAAGGGTAAAATAATCAGCAAGATCCTGCAGAGGCCTCTGTTTGAACCTGATTTCGACAGCCTGGAAGATCCCAAGATCGCAGAGAAAATAGAGCCTATGTTCGAAGAATTTCAGTCTATTTCTGAGAAGTGTGCCAAAGACATAATATGTGACTTTGATCATCCCAGTAGCTTTGCTCATGCCTGCGACGGGAGACCAGTTGGCGGTGGGTATCGCAGGGTCAGTcttgcaaagaaa

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012017 True 1153 mRNA 0.46 6 8703782 8710771

Neighbor

gene id symbol gene type direction distance location
AMCG00012012 pea15 coding downstream 76107 8626155 ~ 8627675 (-)
AMCG00012013 NA coding downstream 86694 8613948 ~ 8617088 (-)
AMCG00012009 NA coding downstream 228732 8474106 ~ 8475050 (-)
AMCG00012003 NA coding downstream 349407 8349300 ~ 8354375 (-)
AMCG00011999 NA coding downstream 435386 8266797 ~ 8268396 (-)
AMCG00012018 NA coding upstream 28806 8739577 ~ 8748073 (-)
AMCG00012020 NA coding upstream 85369 8796140 ~ 8805330 (-)
AMCG00012027 NA coding upstream 196911 8907682 ~ 8928638 (-)
AMCG00012033 NA coding upstream 289931 9000702 ~ 9002383 (-)
AMCG00012034 NA coding upstream 351800 9062571 ~ 9072513 (-)
G133997 NA non-coding downstream 220125 8430988 ~ 8483657 (-)
G133915 NA non-coding downstream 515089 8188289 ~ 8188693 (-)
G133891 NA non-coding downstream 651537 8004018 ~ 8052245 (-)
G133714 NA non-coding downstream 1128635 7551295 ~ 7575147 (-)
G133607 NA non-coding downstream 1566258 7135868 ~ 7137524 (-)
G134069 NA non-coding upstream 91636 8802407 ~ 8802986 (-)
G134143 NA non-coding upstream 443665 9154436 ~ 9191292 (-)
G134226 NA non-coding upstream 703545 9414316 ~ 9416458 (-)
G134298 NA non-coding upstream 945585 9656356 ~ 9656645 (-)
G134396 NA non-coding upstream 1081539 9792310 ~ 9799446 (-)
G134036 NA other downstream 2141 8699411 ~ 8701641 (-)
G134005 NA other downstream 138518 8489200 ~ 8565264 (-)
AMCG00011995 NA other downstream 643906 8047229 ~ 8059876 (-)
AMCG00011974 NA other downstream 1027551 7651556 ~ 7676231 (-)
G133715 NA other downstream 1147074 7545355 ~ 7556708 (-)
G134119 NA other upstream 430053 9140824 ~ 9145295 (-)
G134244 NA other upstream 824497 9535268 ~ 9538892 (-)
AMCG00012058 NA other upstream 901708 9612479 ~ 9626126 (-)
G134395 NA other upstream 1080070 9790841 ~ 9791348 (-)
G134397 NA other upstream 1099027 9809798 ~ 10244924 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000354_01204555_01213381 NA coding CI01000354 null 1204376 ~ 1213708 (+)