AMCG00012040


Basic Information

Item Value
gene id AMCG00012040
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9088852 ~ 9118322 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012040
ATGCTAGATAAAGACACCACAATAGCTCCTGAGAGTGAATTTCTGGTGTGGGATGCCGTTGACGATCCCAAGCCTGGAGTCACTGCTGTCCTTGAACCTGTGAATTTGGCCAACGgtTGTGAAATGATAAGACTGGTGAAAGGCCAACACCGCTGCGATGGGAACTTGGAAATCTTTAGGAATGGAAAGTGGGGTAGAGTTTGTAATGATGGATGGCATAGAGCTAGGGATGAACTTATATGTAAGCAGCTGAATTGTGGAATTTATATGAATAGTTACCTCAGTCGCAATGATCTGAGTAATATAGTGTTGACTGGAGTTAAATGTGCAGGAACAGAGGCAGCCCTGCAAGACTGTAAATCTGATGCAGTTGTTTCAAAATGCTCAGCTGTGACTACAAGAGTGATATGCAATgGAGACACAGTGCGGCTCTCTGGGGGGGGCTGCAGAGGGCGATTGGAGGTGAATCGTGGGGGCACCTATAAAACAGTGTGTCCTCAGTCTGTGGACTCCAGAGACGCAGACGTGGTCTGTAGAGAGCTGGGCTGTGGAGTGTCTGGAGCTGTGCTGGGGGGGGCCGTGTTCGGACAGGGGACTGGGCCCATATGGGCCGATGAGATTCAGTGTGGAGGCGTTGAGGAAAAACTGTCCTACTGTCCTGTGAAGAAAAGAAACCAGCACAACTGCACCCACGCTGATGACGTCAGCATCGTCTGCTTTGGCTACACTGACTTCAGGCTGGTGAACGGTCCTGACCGCTGCTCAGGCAGATTGGAGATGAAGTACGGTGGCCAGTGGGGGACAGTCTGTGACCGTGACTGGGACCTCCGAGACGCCACTGTTCTCTGCCAGCAGCTGCAGTGTGGCCATGCTGAGGCGGTCCTGGGCCCGGACAGATTTGGACAGGGCAACGGGTCTGTGTTCACTGATGTATTCGACTGTGAGGGCATTGAGACCGCGCTGGGACAGTGCCCCATCTCCCCATGGACTCACAGCACCTGCACCAATAGGAGTGATCTGGGCGTGATCTGTTCCAGAGCGGTGGGGTCCGTCAGGCTGCTGGGCGGAGAGAGCCGCTGTGAGGGCCGGGTGGAGGTGTTCTACAGCGGCTCATGGGGGCGGCTGCAGGGCCAGTCTGGGGGCAACGCTGTGGCCTCGGTGCTCTGCAGACAGCTGGACTGTGGTGCCGCCGTACAGACCACCAGCTCCTCTCGCTACGGGCCGGGCCGCTCTGAGGTGTGTCTCATGGGGCTCCGCTGCTCCGGGAACGAGACTCACCTGCAGAACTGCAGCCGCCCCCAGACAGAGACCTGCGGCTCTGGGAGTGACGTGGGAGTGCTGTGCGAgagtgagtctgtctgtcttcagaAGAGTGTCACTGCCTGTATCAGGAACACAGTACTTTTAATCATCGTCTGCTCCAACCGCATGGGGAGTCACACTGCCACACTCATATGTCGGCAGCTCAGCTGTGGAGACAGTTTTTCCTTAGATAACGCTGACAATGTCCCGGGTCTGAAATGGCTGGATAACATTGAATGTACAAGGCACCACACATCTCTGTGGCAGTGTCCTTCCTCACCGTGGGGAGACGACAGCAACTGTGACGACAGAGATGTAGCTGAAATCATTTGCACAgagacagacaggctgcGGCTCTCCGGGGGCCCCAGTAACTGCTCTGGTCGGGTGGAGGTGCTGTTCTGGGGTGCCTGGGGGTCGGTGTGCGATGACTCCTGGGACCTGAGGGACGCCCAGGTGGTGTGCAGACAGCTGCGCTGTGGGGAAGCAGAGAGCGCCGTGGGGGGGGCGGCGTGGGGGGAGGGGAACGGCACTGTGTGGCTGGACGAGGTGAACTGCAGGGGCAGCGAGCTCCACCTGTGGGACTGTGAGCACCCGGCGCTGGGACAGAGCGACTGCCAGCACAAGGAGGACGCCGGAGTCAACTGTGCCAATATGCAGAATATACATCTCTCCAGGGGCCCCAGTAACTGCTCTGGCTGGGTGGAGGTGCTGTTCAGGGGTGTCTGGGGGTCGGTGTGCGATGACTCCTGGGACCTGAGGGACGCCCAGGTGGTGTGCAGACAGCTGGGCTGTGGGGAGGCAGAGAGCACTGTGGGGGGGGCAGCGTGGGGGGAGGGGAGCGGCACTGTGTGGCTGGACGAGGTAAACTGCAGGGGCAGCGAGCTCCACCTGTGGGACTGTGAGCACCCGGCGCCAGGGCTGAGCCACTGCCAGAGCCAGAGACGGGCAGCAGTGCGCTGTGCTGTGAAAGAGAATAAGACATGGTCTGAATCTCAACAGTGGAGCTGTGGACTTGGCTCTGATCTCCTCACTCTCCTCACTCTCCTGTATGACATTGAAGAAGCCTGGGTTGGTGGGGGGTTAGGCCCCTGTGCTGGGAGGCTGGAGGTGTATCACAGGGGCTCCTGGGGGACGGTGCCTGCAGAGCCGTACAGTGATTTCACTGCTCTTGTCATTCCCCAATCAGAGTTCGCTCAGCTGGAGACGACCTCCGACCCCCTCCAGGACGGCCTCTATGAGGAGATCGACCACAAGCTCCAGAGACAGGGAACGTACAGCCAGTACAGGGCAGGGAGCCTCCTGTCTGAAGAGCTGTCCTATGATGACGTTGGAGCTGAAGTAAGTGCGGCTGCAGCCAGTCTGCCTGCTAGTGAGGATGACTATGATGATGTGAAAGAGGAGGAAGACACCTCAGTACCAGaaataaagaaagagccCCCAGGAAAATCCTCTCCAGACTTGGACTACCATGGATATGAAGAGGTGGAAGAGCCTGAagtgagagagactgagaaGCTGGACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012040 True 2829 mRNA 0.58 13 9088852 9118322

Neighbor

gene id symbol gene type direction distance location
AMCG00012034 NA coding downstream 16339 9062571 ~ 9072513 (-)
AMCG00012033 NA coding downstream 86469 9000702 ~ 9002383 (-)
AMCG00012027 NA coding downstream 160214 8907682 ~ 8928638 (-)
AMCG00012020 NA coding downstream 283522 8796140 ~ 8805330 (-)
AMCG00012018 NA coding downstream 340779 8739577 ~ 8748073 (-)
AMCG00012039 NA coding upstream 27805 9146127 ~ 9149395 (-)
AMCG00012045 copa,LOC106600386,LOC102794619 coding upstream 60145 9178467 ~ 9195709 (-)
AMCG00012051 NA coding upstream 173161 9291483 ~ 9297574 (-)
AMCG00012050 NA coding upstream 203289 9321611 ~ 9333991 (-)
AMCG00012054 NA coding upstream 242706 9361028 ~ 9372681 (-)
G134069 NA non-coding downstream 285866 8802407 ~ 8802986 (-)
G133997 NA non-coding downstream 605195 8430988 ~ 8483657 (-)
G133915 NA non-coding downstream 900159 8188289 ~ 8188693 (-)
G133891 NA non-coding downstream 1036607 8004018 ~ 8052245 (-)
G133714 NA non-coding downstream 1513705 7551295 ~ 7575147 (-)
G134143 NA non-coding upstream 36114 9154436 ~ 9191292 (-)
G134226 NA non-coding upstream 295994 9414316 ~ 9416458 (-)
G134298 NA non-coding upstream 538034 9656356 ~ 9656645 (-)
G134396 NA non-coding upstream 673988 9792310 ~ 9799446 (-)
G134402 NA non-coding upstream 734579 9852901 ~ 10347725 (-)
G134036 NA other downstream 387211 8699411 ~ 8701641 (-)
G134005 NA other downstream 523588 8489200 ~ 8565264 (-)
AMCG00011995 NA other downstream 1028976 8047229 ~ 8059876 (-)
AMCG00011974 NA other downstream 1412621 7651556 ~ 7676231 (-)
G133715 NA other downstream 1532144 7545355 ~ 7556708 (-)
G134119 NA other upstream 22502 9140824 ~ 9145295 (-)
G134244 NA other upstream 416946 9535268 ~ 9538892 (-)
AMCG00012058 NA other upstream 494157 9612479 ~ 9626126 (-)
G134395 NA other upstream 672519 9790841 ~ 9791348 (-)
G134397 NA other upstream 691476 9809798 ~ 10244924 (-)

Expression


Co-expression Network