G132660 (LOC105020582,LOC108229068,LOC104920020,LOC106608724)


Basic Information

Item Value
gene id G132660
gene name LOC105020582,LOC108229068,LOC104920020,LOC106608724
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 4259544 ~ 4322290 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU166343
GAGCTGCAGGATGGAGTCGTACACCTTGCACTGCATCTGCCCGGTACTCTGGAAGGCGCAGGACATCCACAGCCCCTGGTACATGGCCACCGCCGTGATGATGTTGTCCCCCACATAGGCCGACATCTGCCACTGGGGCAGGATGGTCCCGATGATCAGCCCGATCAAGCCGATGAGCGCCAGCGCAAAGCCCAGCATCTGCAGCCCGGAGTTAGCCATCTGGATCAACGCACGTCCAACGCCGGCCGGAGAGAAGAAACGTCACCAACAAGTTGCCAGACGACTGGATGGATTGGAAAAATGAGACGGATGTGTCTGAGGTCTGTATCCAGGGAAGAAGATGTCCTTCAACGCGTGTTCACACCGCCTTTGTCTTCCAACTCCGGTGCACCTGCTACAATTTGGGAATCAAACTACTTTTTTTGCGCACTTGGTCAAATCCAGTCAATGCTTCCCCTCCTGAGGTGTAAGGTTACAGTAAAAGCAAGGTAACGACGTCTCTGGGTGATTTTATCCAGGCAACCCGTGCTGCACCGTGCCGTCCTGCGCAGGTCCGTCTCTTACACCTCAGGAGGGGA

Function

NR:

description
PREDICTED: claudin-7-A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU166343 True 578 lncRNA 0.56 2 4259544 4322290

Neighbor

gene id symbol gene type direction distance location
AMCG00011785 NA coding upstream 10127 4243172 ~ 4249417 (+)
AMCG00011781 NA coding upstream 78412 4175435 ~ 4181132 (+)
AMCG00011782 NA coding upstream 86867 4164833 ~ 4172677 (+)
AMCG00011777 NA coding upstream 284405 3970320 ~ 3975139 (+)
AMCG00011776 NA coding upstream 294361 3947402 ~ 3965183 (+)
AMCG00011793 LOC105024602,LOC106563375,LOC105902387,LOC107564776 coding downstream 271670 4593960 ~ 4601353 (+)
AMCG00011794 NA coding downstream 324020 4646310 ~ 4648415 (+)
AMCG00011796 nlgn2,LOC107750775,LOC107564776,LOC107664280,LOC107659731 coding downstream 361386 4683676 ~ 4697341 (+)
AMCG00011795 NA coding downstream 397524 4719814 ~ 4721921 (+)
AMCG00011801 NA coding downstream 466025 4788315 ~ 4804985 (+)
G132655 NA non-coding upstream 40561 4218547 ~ 4218983 (+)
G132596 NA non-coding upstream 147614 4109513 ~ 4111930 (+)
G132586 NA non-coding upstream 241788 4016127 ~ 4017756 (+)
G132573 NA non-coding upstream 263815 3990427 ~ 3995729 (+)
G132574 NA non-coding upstream 266640 3992264 ~ 3992904 (+)
G132722 NA non-coding downstream 430432 4752722 ~ 4752923 (+)
G132726 NA non-coding downstream 441399 4763689 ~ 4763888 (+)
G132734 NA non-coding downstream 452864 4775154 ~ 4775539 (+)
G132755 NA non-coding downstream 525242 4847532 ~ 4847740 (+)
G132758 NA non-coding downstream 528316 4850606 ~ 4851041 (+)
AMCG00011771 NA other upstream 281882 3903675 ~ 3977662 (+)
AMCG00011770 NA other upstream 361948 3892381 ~ 3897596 (+)
G132271 NA other upstream 1054947 3201374 ~ 3204597 (+)
AMCG00011735 NA other upstream 1158407 3078417 ~ 3101137 (+)
G132221 NA other upstream 1254882 3001432 ~ 3004662 (+)
AMCG00011806 NA other downstream 792800 5115090 ~ 5120098 (+)
AMCG00011830 vmhcl,LOC107560354 other downstream 1437568 5759858 ~ 5761248 (+)
G133059 NA other downstream 1506511 5828801 ~ 5829532 (+)
AMCG00011837 NA other downstream 1564627 5886917 ~ 5888884 (+)
AMCG00011853 zfhx2,LOC108245441 other downstream 1571234 5893524 ~ 5907174 (+)

Expression


Co-expression Network