G134259


Basic Information

Item Value
gene id G134259
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 9567280 ~ 9571718 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU168499
CCCATATGACAGCTTTGGCAAAACAATTAGAATAACACATCACCAcatgaaatgtttgtttgtttcttcgtttttaacatttttattaaaatcttgAATACAATTTCATGTGTAGAGATaatgcaaatgtacaaaatataaaaagaaccCCCTCCTTTTTACTTAGTTTCCTTAAGTTAAACCCCATAACCATCCAACTTAGAGGAGAAAgtcaaaatatgaatgtgatgTTCTTAGGCCAGCGGTTCCCATCCCAGGGCCGGGGGACCCAATGTCCAGTGAGATTTTGTTGGAACCAAGATCTACaatccttaattgaagtaacaagtGTCCAAATCAGAgcttattcatacatttaaaccCTTGGAGACCTCaaagtaaatataaaagtatataaagcAGCTGAATTCTCCAACTTTTTGTAAGATGgtccattttaaaagtcaaatgaagCCATACTCAGCTCCATAAAGGTTTGAGTACATTGATTGAGAGTTTGGTTGCattaaaaaccagcaggacaggacagtgtgtccccaggaccagggttggacaccACTGTATTAGCTCAAATGCAAAACATctagaagaaaatgtaaaagtgcaTAAGTCTCATCCTGATGTGGCTCGTCTTAACAGTGACACATGCAGAGATGCAGTCATGAAAAAACTAGTAAAGACAGACAAGAGTGAGCCATTTAGCCCTTCAGGCGTGTTGGATTGCCAGTAGTTAATTGGTCCCAGAGGGCCCTTCGTTGGAAAGCCAGTTTGTAATGACATATTGGTAACACTGTGATATATCCACTGTATGCTGTAACTAATGGTGAAGATGCTCAGAGATGCTTGAATTTGTAGTAATTGTAGCTGTACTTTCAAATTTTCCTTGTGATATACAATAATTTCCTGCCACCTTCTAGAGAGGGCAGGTCCACGACTCACAAaatatttagaacataagaaagtttacaaacgagaggaggcaattcaacccattgtgctcgtttggtgtccataaataactgagtgatccaaggatcctatccagtctgtatttaaatgttcacaaactttcagcttctaccaaatcgctggggagtttgatccagattgtgacgactctctgtgtgaagaagtgtctcctgttttctatcttgaatgccttgatgcccaatttccatttgtgtccccaggtgcatgtgtccctgcagatctggaaaatcTACTCTGGAGCAAGTGACAGTTCACAGTTTAATTCTTACACTTTTATAATACATCTGTAATATTGTTTAAGAAGgagaaatacattatattatccATTATGATTCATAATGCATCTTGACCACAGATCCTTTAAGAAATGTCCCCTCAAGACTTGCAAAACTCATTTTCACCAAGGGAAAAGTAGGTTGAATAAAGGAAAATTAACCTCAGTTTAGTTACTTAAATGAAACCACAAAAGCGCTAGGGTTCCATATTTTAAACTTGCACTAGATAAAGTCTCAATTAAGTGGCCTTGTCAATCCCAACCTGAAAACCTCTCATCTGTGTTGTATACTGCATtagtataataaaatacacatttttaaaatcttttggaggtgcagttaaaaaaaaaacataagactTTGTGCATGCTCTTTAAAGATTAACAAAAGTCCTCTTTGGACAAAAGTCCCAGTTGAGGATAATGCACATCGAGCACATTCCTGGAGTCCAAGTGGAAATACATTCAGGAGCTAAGAGGCACTTGCGTTTGCACAGATGTGGGTCAGTGTTTGGGGTAAATTCCCCGTCcttattttaaataggtttcACAACAAAGGGTTTTCATGAAGTCCTGAAGATGAATTGAACAGCTTCCCCTTTGCCTGTAAATTTCCTCTCTTTCACGGGTTCTCTTGTGGTCGCTGCCACACCCTATCCCTGTTCCTGATTCACATCCAAGTGTAAACATGTGCATCGCCTAGTGACAGTATTGAGACGTGGGGGGTACTTGAAGGATTTTGGAAACTGAATAGAGTCTCAGTGCAGGAAGGCCAGTTTCCACAGATCAAAGAGGAGGATAGATGCAGCGTTGGGGTTCTCTCAGTTTTGCGTGGCCACCCATGCATGCTCTCGAGTATCCCTCTGATAGATGCATTAGTTACAAAGTCCCAGAACCCAAATCTTTTAATACATCAGTGGAACAGCAGGTCAGTCGATATGAGCTCTGGGACTTTTAACCGatctaaattgcttaattggacaTTTATAGTTGTTGTCTGCTACTGCACAGTTAAGGATTGATGtgagtaactgagagctcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU168499 True 2307 lncRNA 0.39 2 9567280 9571718

Neighbor

gene id symbol gene type direction distance location
AMCG00012056 NA coding upstream 22295 9542014 ~ 9544985 (+)
AMCG00012055 NA coding upstream 33039 9508741 ~ 9534241 (+)
AMCG00012052 NA coding upstream 126653 9438327 ~ 9440627 (+)
AMCG00012049 NA coding upstream 248644 9311422 ~ 9318636 (+)
AMCG00012048 NA coding upstream 259473 9305545 ~ 9307807 (+)
AMCG00012067 NA coding downstream 63778 9635496 ~ 9643331 (+)
AMCG00012057 LOC107713649,LOC107698496,LOC107600231,LOC106569574,LOC105905623,LOC107676327 coding downstream 88031 9659749 ~ 9673361 (+)
AMCG00012069 LOC106569594,LOC108427136 coding downstream 140504 9712222 ~ 9719197 (+)
AMCG00012075 NA coding downstream 408172 9979890 ~ 9999729 (+)
AMCG00012076 NA coding downstream 428020 9999738 ~ 10004091 (+)
G134236 NA non-coding upstream 28306 9534314 ~ 9538974 (+)
G134222 NA non-coding upstream 152363 9401454 ~ 9414917 (+)
G134141 NA non-coding upstream 371363 9194562 ~ 9195917 (+)
G134084 NA non-coding upstream 678334 8888717 ~ 8888946 (+)
G134068 NA non-coding upstream 764402 8802523 ~ 8802878 (+)
G134284 NA non-coding downstream 74308 9646026 ~ 9646444 (+)
G134292 eif3f,LOC105905622 non-coding downstream 82134 9653852 ~ 9654600 (+)
G134305 NA non-coding downstream 105060 9676778 ~ 9679102 (+)
G134326 NA non-coding downstream 197939 9769657 ~ 9770685 (+)
G134335 NA non-coding downstream 275804 9847522 ~ 9923017 (+)
AMCG00012043 NA other upstream 257349 9279988 ~ 9309931 (+)
G133974 NA other upstream 1004066 8561042 ~ 8563214 (+)
AMCG00012008 NA other upstream 1046632 8510011 ~ 8520648 (+)
AMCG00012006 NA other upstream 1170239 8378333 ~ 8397041 (+)
G133822 NA other upstream 1512259 8052124 ~ 8055021 (+)
G134291 NA other downstream 79631 9651349 ~ 9653234 (+)
G134295 NA other downstream 84639 9656357 ~ 9656727 (+)
G134338 NA other downstream 281172 9852890 ~ 9867143 (+)
G134340 NA other downstream 364208 9935926 ~ 9936411 (+)
G134357 NA other downstream 462468 10034186 ~ 10034693 (+)

Expression


Co-expression Network