G136341


Basic Information

Item Value
gene id G136341
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 17127155 ~ 17264404 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU171331
cctctctccctacTCCCCCCCAGCACACACCCTTTTACTAAATACAAGGAAAAAGTTTGCCTGACGGAAGGGGATAAGGCAGATATAATAGGCACAGGCGAGTCACACACAGAGTCGAGGATCCATACTAAAAGAGTCGCCCCAAGAAACACCGTGCAAACAGAAGGACAGAAAACGAGACACCAGTCGCTGTTCAGTGAAGCTTGCCAGCCGTCCCTCTGTCCAGTCCGTCCGCCTGTCCGTCCCGCAGCAAGAGATGGAGTCTGCCATTATGACCATAGTGAAAGTGTTCCAGAGCGCCTCCAAGGGCCGTGACTCGATGGGGGGCAAAGACTTCCAGAAAATGGTGCATAGCCAGCTGGGCAACATCCTAACGgacacAGACAGTAAAAAGGCCGTGAATGAGATGAAGGAGGGTCTGGACGACAATAAGGACGGGAAAGTGAGTTTCCCCGAGTTCATGACGCTGATCGGCTACATCGCCAATACCCTGAGCGAGCAGCGCTCCGCGGCCACCCAGCAGCCCGAGACCCAGGGCTGACGCAGCCAAGACGCAGCCAAGACGCACCGGACACATGTCAAGACACCCGAGACAGGGCCGAAACAACTGATACACACCTGACACCCCTAACTCGCATCATACACCattgacacactgcacactgttaCACACCTAACAACAATGTCCTCACTACGAGACTACAGCGAACACTGTCACTGCAGTAACGTGACAACACAACACTACAgcaaacacagcacaacactgtcCCCACTACAACACTACAgcaaacacagcacaacactgtcCCCACTACAACACTACAgcaaacacagcacaacactgtcCCCACTACAACACTACAGCAACACGGTGCAAAACAGTGTCACTGCAGTAAACATGACAACACAACACTACAACAACACTGTGCAAAACAGTGTCAACGCAGTAACAACACTACAGTGAAAACAACGCTTTTGACTTTTGTTGCTCTGAGAAATCTTAACTCTTCCCATCTGATCCTGCCGTTCTTGGCATAATGTTGTCTTTATATACCTTtgcccaaacaaacaaacaaaccgaaGACATTGTTACAGACGAAATGTGTCGCCTACCTTGTACTCTATGCTTATGCCCTGTAATGCCCTCATGCCATTTCTGCTTCACCGGCAGCGGTGGACTGGTGCTCAGTTACTGCTGCCGGCTGCTGGCGAGAATGACGGCGGtaataaagagaaacaaaagcaatggTCTCCAAAGtggcttgctttttttttttcttcacacttGGACAGATTAGACCCGCATGGCTGACGCTGCCTGACAGGTGCCTGTGTCACACCTGCAGGAGCTGGTCAACCCTGCAGCGGCCCGGCCCTGGGGTAtgagagtggagagagaggggctaaTACACCCAGAGAGGGAGACGGGCATTAATATTGATATAcccagagaaagaaagagaaagacaggttaatacacagaaagagagaggggttaatatactcagagagagaaagaggggttaatacacccagagagagagagagagagagacaggggttAATATACCCAGACAGAGACAATGTGACTAATCTCCATATTCTggtaatgcatgttttaaatgtgtgtcaaCCAAATAAACTTAAGCCGTGGGTTAGCTTAGTTCTCGTGTCAGTAGTGTAGAAAACTGCAAACGAATCCGGCTGGGCGATATTATCTTACTTACacacatgttttattaatcgGCAACATCATTACAAAGGCTCagcaataacagaaaacaaagtaatatgCCAGTCTGCTATAAActgcataataatacatataaatcaaGTGGAAGCTCAGTAGAGATCGCTGTGCACTCCACAACACTGTAAAACCAATTAGCTTCATTATAACCATTCACAAAACTAACAGCATTTAATTATGTACTTTAATTGAGATTACCTTCCAATATATATCAATTCTACCCATACTATACATACTACATACCATACTTCAGTAATGTTTAattgttggtatgtagtacgtgtagtatgggtagtatgtGATTTCAAATACAGCCTGGGTTTCATAATAACTCCCACCTTACAGTTCAGATCTGtgccagagagacagagagaaagagagagagagtgtaataCACCCGAACAGAAAGAGGGATTAATatacccagagagagagaagcacatACATAGAGAGAGGGCTTTAAGGAGTGTGACAGGGAGAAACACCAGGAGGAGTATGGAGGAAAGGAGGTATAGATGtttataaagagagagagatcacaTATGTGGTGAAGACTCTGTTCCCTTCTTGAGAAAGCAGTTGAAGTTCCagcacagtaaataaatacttgtacat
>TU171333
agacagagagggggagagagaaagagagagataagagagtggaggaggaggaggaggaagcagAGGTAGAGGTAGAGGTAGTGAGGGAGAGGTGGGTGCCAGTCACGACCATAAAAGTCGCATCCCGACCATCTTGTCTCACTCCTGCTCTTCCCTCCAGCTTGAACTGCACTTCTCGTCTCCTCACAGgtagATTCTTCTCTGCGCCAATATGTCTGATTTGATGATATCAATCAAATCCATGCTGGATGTCTTCACCAGGTACGCCAGCAGAGATGGTGACCCCAACTCCCTCAGCAAACCTGAGCTGAAAGAGCTGCTGGAGAAGGAGCTGACAGGCTTCTTGGATCCCAAAGACCCGTCTCAGGTGGATCAGGTCTTGAAAGGCTTGGACCAGGACAAATCTGGCACAGTGGATTTCCAGGAGTACGTCACTATGGTGGCAGTGCTCGCCTGTATGTGCCGCGACTTCAAGCCTAGCAGTAAGGGTGCCGCCCAGAAGAAGTGTTAGGCCCAGTCCCCCAGTTGAACCCTGCCCCCGTCCCCACAGCCCCCTCCTCTCGCCTTTCCATCACATTCGCAATGTTCAGGGAGAGAGAATATCCTCCCTTTCTCCATCTCTTtgcataaatgtattaaaaaaacaaagcctgCAGGGTgcaaataataacagaataaaatgttttattacgttttgaactgaaataaacGTGTCTGTGCTGTC
>TU171337
ctccctctccttccCTCcacccttctctccctcctctctccctctccttccctccatcCCTCACTCTCCAGCAGACGGGGGGtggtgtctctctttctctcacattCGCTTGGCCATCATGCCGATCAGAGTGCCGAACTCCACGATGTCGATCTGTCCATCCTTGTTGTTATCCAGACGTTTCATCACCTCGCTCAACTTTGAACTGCAGTCTGTTCCTTCTTGCTGCACTCAGCCTTCAGCAGTTTCTTGAGCTCATCTGGGCTCAGCGTGTCCTTCTGCTGGTCCTCAGAGGCGTACTTCTTGAACACCTCGGACACGATGCGCACAGCGTCAGTCAGAGACATGGTCAGTGTAGGATAGTGGagtctgcaaacacacacagtg
>TU171338
agacagagagggggagagagaaagagagagataagagagtggaggaggaggaggaggaagcagAGGTAGAGGTAGAGGTAGTGAGGGAGAGGTGGGTGCCAGTCACGACCATAAAAGTCGCATCCCGACCATCTTGTCTCACTCCTGCTCTTCCCTCCAGCTTGAACTGCACTTCTCGTCTCCTCACAGgtagATTCTTCTCTGCGCCAATATGTCTGATTTGATGATATCAATCAAATCCATGCTGGATGTCTTCACCAGGTACGCCAGCAGAGATGGTGACCCCAACTCCCTCAGCAAACCTGAGCTGAAAGAGCTGCTGGAGAAGGAGCTGACAGGCTTCTTGGATCCCAAAGACCCGTCTCAGGTGGATCAGGTCTTGAAAGGCTTGGACCAGGACAAATCTGGCACAGTGGATTTCCAGGAGTACGTCACTATGGTGGCAGTGCTCGCCTGTATGTGCCGCGACTTCAAGCCTAGCAGTAAGGGTGCCGCCCAGAAGAAGTGTTAGGCCCAGTCCCCCAGTTGAACCCTGCCCCCGTCCCCACAGCCCCCTCCTCTCGCCTTTCCATCACATTCGCAATGTTCAGGGAGAGAGAATATCCTCCCTTTCTCCATCTCTTtgcataaatgtattaaaaaaacaaagcctgCAGGGTgcaaataataacagaataaaatgttttattacgttttgaactgaaaaaaaaaaaagacattatttttattgaaaataaaaccagtataATCTTGAAAATGAATCAGAGGTGATGGCTTTCAAGGTCAGGCTATGTGCAAAAGAGGCTTCTGTAACAGAGGATGCTGACAACGAACCTCTGCTTTTAAGGCACAGGCAACTGCCAATTACTGAGCCTCATCTCTGTGCTCTGTACCTGGGGGGGTTCTT
>TU171339
TGACTCTTAACAGCCCGTGAGTGAGGCCCGTGCCCGACTGCGGCTGCGCAGGAACGCCATCCCCGGGCAGCCGCGCACGAACTCGTTCCACAGCTCGTGCAGCAACACGCCCTCGAGCCCGGCCTGCCGTGCGTCCCGCAGccggatctctctctctctccctctctcctccccctctctctctccctctctccctctctcctccccctctctccctacTCCCCCCCAGCACACACCCTTTTACTAAATACAAGGAAAAAGTTTGCCTGACGGAAGGGGATAAGGCAGATATAATAGGCACAGGCGAGTCACACACAGAGTCGAGGATCCATACTAAAAGAGTCGCCCCAAGAAACACCGTGCAAACAGAAGGACAGAAAACGAGACACCAGTCGCTGTTCAGTGAAGctTCTCTCCGCCCACTCttttttcctgtctctctgtcctaCAGCTTGCCAGCCGTCCCTCTGTCCAGTCCGTCCGCCTGTCCGTCCCGCAGCAAGAGATGGAGTCTGCCATTATGACCATAGTGAAAGTGTTCCAGAGCGCCTCCAAGGGCCGTGACTCGATGGGGGGCAAAGACTTCCAGAAAATGGTGCATAGCCAGCTGGGCAACATCCTAACGgacacAGACAGTAAAAAGGCCGTGAATGAGATGAAGGAGGGTCTGGACGACAATAAGGACGGGAAAGTGAGTTTCCCCGAGTTCATGACGCTGATCGGCTACATCGCCAATACCCTGAGCGAGCAGCGCTCCGCGGCCACCCAGCAGCCCGAGACCCAGGGCTGACGCAGCCAAGACGCAGCCAAGACGCACCGGACACATGTCAAGACACCCGAGACAGGGCCGAAACAACTGATACACACCTGACACCCCTAACTCGCATCATACACCattgacacactgcacactgttaCACACCTAACAACAATGTCCTCACTACGAGACTACAGCGAACACTGTCACTGCAGTAACGTGACAACACAACACTACAgcaaacacagcacaacactgtcCCCACTACAACACTACAgcaaacacagcacaacactgtcCCCACTACAACACTACAgcaaacacagcacaacactgtcCCCACTACAACACTACAGCAACACGGTGCAAAACAGTGTCACTGCAGTAAACATGACAACACAACACTACAACAACACTGTGCAAAACAGTGTCAACGCAGTAACAACACTACAGTGAAAACAACGCTTTTGACTTTTGTTGCTCTGAGAAATCTTAACTCTTCCCATCTGATCCTGCCGTTCTTGGCATAATGTTGTCTTTATATACCTTtgcccaaacaaacaaacaaaccgaaGACATTGTTACAGACGAAATGTGTCGCCTACCTTGTACTCTATGCTTATGCCCTGTAATGCCCTCATGCCATTTCTGCTTCACCGGCAGCGGTGGACTGGTGCTCAGTTACTGCTGCCGGCTGCTGGCGAGAATGACGGCGGtaataaagagaaacaaaagcaatggTCTCCAAAGtggcttgctttttttttttcttcacacttGGACAGATTAGACCCGCATGGCTGACGCTGCCTGACAGGTGCCTGTGTCACACCTGCAGGAGCTGGTCAACCCTGCAGCGGCCCGGCCCTGGGGTAtgagagtggagagagaggggctaaTACACCCAGAGAGGGAGACGGGCATTAATATTGATATAcccagagaaagaaagagaaagacaggttaatacacagaaagagagaggggttaatatactcagagagagaaagagggACGGGGGGtggtgtctctctttctctcacattCGCTTGGCCATCATGCCGATCAGAGTGCCGAACTCCACGATGTCGATCTGTCCATCCTTGTTGTTATCCAGACGTTTCATCACCTCGCTCAACTTTGAACTGCAGTCTGTTccctacagacacacacacagacgtacataatattattgttgattatgatgatgattaatattattattataattatcattatgattttgattatgattattagtgGGGAGACTCACCTTCTTGCTGCACTCAGCCTTCAGCAGTTTCTTGAGCTCATCTGGGCTCAGCGTGTCCTTCTGCTGGTCCTCAGAGGCGTACTTCTTGAACACCTCGGACACGATGCGCACAGCGTCAGTCAGAGACATGGTCAGTGTAGGAATGAGAAAAGCTGGTTGTGTTAGTGAGACTCGCTCTGTCCTGCGTTATATATAGCTCTGAGCGCTAGGGAGGGGAAGGGAGGTTGGAGTGGGGATCCTCCTTCC

Function

GO:

id name namespace
GO:0060841 venous blood vessel development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU171331 True 2365 TUCP 0.46 3 17129980 17134830
TU171333 False 724 TUCP 0.51 3 17231376 17234949
TU171337 False 387 lncRNA 0.55 3 17127155 17209359
TU171338 False 907 TUCP 0.48 4 17231376 17264404
TU171339 False 2276 TUCP 0.51 5 17129774 17214883

Neighbor

gene id symbol gene type direction distance location
AMCG00012368 NA coding upstream 64102 17056530 ~ 17063053 (+)
AMCG00012370 NA coding upstream 76109 17042195 ~ 17051046 (+)
AMCG00012367 NA coding upstream 98067 17022659 ~ 17029088 (+)
AMCG00012369 NA coding upstream 130091 16993479 ~ 16997064 (+)
AMCG00012366 NA coding upstream 142161 16977572 ~ 16984994 (+)
AMCG00012389 LOC107549236 coding downstream 4662 17269066 ~ 17289895 (+)
AMCG00012388 krtcap2 coding downstream 104859 17369263 ~ 17371553 (+)
AMCG00012386 NA coding downstream 110556 17374960 ~ 17380121 (+)
AMCG00012395 chrnb2,chrnb2b,LOC106575520,LOC104959165 coding downstream 233050 17497454 ~ 17504572 (+)
AMCG00012396 ilf2,LOC106588321,LOC106569884 coding downstream 265369 17529773 ~ 17537629 (+)
G136295 LOC103039167,LOC108433880,LOC103372036,LOC105891956,LOC108256189,LOC108256188,LOC106605297,LOC104942599 non-coding upstream 148942 16957458 ~ 16978213 (+)
G136297 NA non-coding upstream 169860 16956689 ~ 16957295 (+)
G136286 NA non-coding upstream 212460 16912235 ~ 16914695 (+)
G136237 NA non-coding upstream 220050 16842567 ~ 16907105 (+)
G136236 NA non-coding upstream 295353 16829050 ~ 16831802 (+)
G136436 NA non-coding downstream 25741 17290145 ~ 17290529 (+)
G136444 NA non-coding downstream 36123 17300527 ~ 17304999 (+)
G136457 NA non-coding downstream 66390 17330794 ~ 17332570 (+)
G136458 NA non-coding downstream 75174 17339578 ~ 17340736 (+)
G136486 NA non-coding downstream 137615 17402019 ~ 17402360 (+)
G136296 NA other upstream 127066 16963330 ~ 17000089 (+)
G136258 NA other upstream 251555 16871838 ~ 16875600 (+)
G136255 NA other upstream 259707 16866537 ~ 16867448 (+)
G136245 NA other upstream 263562 16811706 ~ 16863593 (+)
AMCG00012351 NA other upstream 362047 16733426 ~ 16765108 (+)
AMCG00012387 NA other downstream 120532 17384936 ~ 17388799 (+)
G136489 NA other downstream 147357 17411761 ~ 17476097 (+)
G136499 NA other downstream 195080 17459484 ~ 17466059 (+)
AMCG00012401 adar other downstream 244968 17509372 ~ 17522821 (+)
G136558 NA other downstream 282964 17547368 ~ 17547968 (+)

Expression


Co-expression Network