G137332


Basic Information

Item Value
gene id G137332
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 20165283 ~ 20228036 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172654
TGattttagaatatttattttcttgcaccCCAATATAATTTAACTCCCATTTTCtcacaaataaaaagtgtgaATATACAAAGAGATCACAGGAGGAAGGGGGGGCAGCCTTTACATTTGAGAATTTCCTTTCACAATTTTGAGCTGCACGTCCTAAGGATTAATACCACTTTTTGAATTTACACGtgtaatttatacatttgtcaTCGGTAGAAAACTGATTGTAGAAACCATCCTCGCCCTATCTATTCCACTTATTAAATTCTTAATATATGGTTTGCATACTGAAATACTTATAAAATGTATCCTAGGCAGAGCGAGACTGCAGTTATTCAAATACCTGTTTGGGAGGATTTGCATGTGAAACTCCCTATCcctcaatgtgtgtgtgtacacgcTTAGGTTTCTCTCTTTATCAACTATGCCACACTACTCCTATTGGGGGGGGATATTTGGCACTCCTAGGGGAGTTTTGGAGAGCTTGAACTGCAGGCAAGTCATACAGTTTTTCAGaatgcagcattttattttctgatccGTTTTACTTGTAAATGGATTATTCTTGACTGTTTGAGTGAGAAAGAGGCCAGAAACACAGAGCCCCCCTGACACCAGAGTACAGCAGCCGCACTCCACCAGCACAGGTCCACTCCTCCAGCTGTTCTACTGCGGAGTTGGGCTTCAGCCAGGTGTCTCCACTACCTCTTCCTAGACAACCCCCCCTGCCCATTCCCAGTACTTGAGATCTTCAATAATAACTAATCAATGCAACCTGACACTGGGCTGGTGCGGATCCTCTGGTAGCGATCACAGccgatgtgtgtgtgtgtgtgtctgtgcacaAGCACCTAGGCATGGGTGTGTTCAATttcttcaattttattttacattctttcCAAGTAGCAGCTTGCTTAGtcagacaggacaggacaggggaATTTTcccaataattatatttaattaagcagTTAAGAAGGGGTAGGGGGGCGGGGTGTTTGGCTACAGTGCTGTTCCACTTCCCCTGCACAGCCAGCAGGTGGAGGCATTGGCACTGATAACAGAGAGAAGCAAGGTGTAAGGTTGAACTGTACAAGACATTAGAACAACCCCATccaacacagtacagcacaatacacacaatTCCATCTCCAGTTCCACTGCGACAAACCCCGGGCACCCAGCAAGAGTGGCCAATGATGATAGATgggataaataaatatccaattaaattatttttagttcAGTTATAAATGTGTCAATCTAATTGTAACATCATAAAACCAAAAAAGGTCACAGGGTTTaatccaggaccagggctgggcaaccactgtactgtactgcactgcacatgaCATGATGGCCAAAACAAATCACCCCTGGGGTAATTCAAGAATTTGAATTGGTAGTTTGTTTGCAGCTCAGttggaataatacaaaaacaaaacggaaCAGAAGACCACAGGGTTAAGTCCCAGACCAGGGCTGGACAAtcagcactgtgctgtactacgCTGCCCCTGGTGGTCAGCCTGGAGACAGCAGAGGTGCACctgtgctctctctcctgcccgCAGTTCTGGGGTGGCCCTTGGCTTGGGGGTGAGGGGATGGGTCAGCCAGTCTGCCAGAAGGGGTTGTTGGGTCTATGCTACCACCCAGCGCCACCGCCACCCCCCAAGCCAATAAAAGTTCTATGAGACACAGAGGGGAGGTGGACCAAAATCCTACAAGACACTATGCCCCCATCCCCTCAGAGACCAGGgctccccctccaccccactGCTGCAGGACAGACAATGAGGAAGGTGGATTTAAAAGGGGGTTGACAACTggcaagggagagggaggggtgaAGGACAACACGGGAACCTCTGCTCAATCCTGCACCCCCCATTGCATTACACGGGTATGACAGTGTACATAGAACACagtataaaacaattaaaaaaaaaaaccatcatAAAAATAGCAACATCTGAACCACaccagtgacacacacacagacacactccaaAGCATACATCTgtacatgacacacacacacccactcaGATGTGTGCACACGTGCATACTGACATGgggcacacactcacacagacgcacacacagcaAATTAGATTAGCcactctttaaaacaaaacaacccccccaccccaccaaaaaaaaaaatatatagagctATAATCATGACAATAATGGTACACACGAGTCCAAGCAAATATACATCCATTGAGTAGCCCTGCCACGCTGTCAATTCGGTTCATCCGTCCCCTCACCCTCTGTGCTCTACCCTGGGctcgcccccccccaccccagactGGAGCAGACTGACAGGGAGGAGAAAAACCTTGCCGCTCTCTTCCCGGCGAGTGCCGTAGGCTGAGCCATGCGAGCGGAAAAACCCCTCTGATCACCCTCTGCCTCCCCCACCTCACCAAATCTAAAACACATTCAATACAACAACGGGAGAGGGAGGCGAGACTCCAAGCTTCATCTCTTAATATATACTCATATTCCTCTCCACAACCGTGTACAAACATACTAGCGTGCTTTTGAGTGAAgttacatgtatgtgtgtgtatatacacacatatacNNNNNNacacacacacacacagagcacaaatAATCACATCACGCATGCACTGCACATGTACCAACAGCACAAAAAGAAACCTGCACATATacaaaccacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172654 True 2697 lncRNA 0.46 2 20165283 20228036

Neighbor

gene id symbol gene type direction distance location
AMCG00012511 NA coding upstream 30630 20133322 ~ 20134653 (+)
AMCG00012496 NA coding upstream 308580 19852153 ~ 19856703 (+)
AMCG00012497 NA coding upstream 339020 19817519 ~ 19826263 (+)
AMCG00012495 NA coding upstream 377641 19763003 ~ 19787642 (+)
AMCG00012492 NA coding upstream 537914 19617738 ~ 19627369 (+)
AMCG00012514 NA coding downstream 11798 20239834 ~ 20240031 (+)
AMCG00012517 NA coding downstream 55213 20283249 ~ 20291367 (+)
AMCG00012518 LOC107669979 coding downstream 72790 20300826 ~ 20327286 (+)
AMCG00012515 NA coding downstream 120571 20348607 ~ 20353279 (+)
AMCG00012519 NA coding downstream 144644 20372680 ~ 20385756 (+)
G137242 NA non-coding upstream 371751 19788987 ~ 19793532 (+)
G137196 NA non-coding upstream 475498 19659746 ~ 19689785 (+)
G137177 NA non-coding upstream 656085 19504883 ~ 19509198 (+)
G137155 NA non-coding upstream 739745 19423553 ~ 19425538 (+)
G137144 NA non-coding upstream 769530 19361344 ~ 19395753 (+)
G137364 NA non-coding downstream 93570 20321606 ~ 20328824 (+)
G137494 NA non-coding downstream 305716 20533752 ~ 20533959 (+)
G137539 NA non-coding downstream 528994 20757030 ~ 20757264 (+)
G137634 NA non-coding downstream 992163 21220199 ~ 21221044 (+)
G137631 LOC107575789 non-coding downstream 1003944 21231980 ~ 21267912 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other upstream 269684 19891167 ~ 19895599 (+)
G137252 NA other upstream 349666 19814925 ~ 19815617 (+)
AMCG00012480 NA other upstream 815081 19332328 ~ 19350202 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other upstream 926325 19237689 ~ 19238958 (+)
G137083 NA other upstream 990862 19169748 ~ 19174421 (+)
AMCG00012512 NA other downstream 18615 20246651 ~ 20270919 (+)
AMCG00012516 NA other downstream 103045 20331081 ~ 20344646 (+)
AMCG00012522 atp8b2,LOC107677029,LOC107714674 other downstream 172973 20401009 ~ 20422556 (+)
AMCG00012521 NA other downstream 202889 20430925 ~ 20445287 (+)
AMCG00012523 NA other downstream 253078 20481114 ~ 20493787 (+)

Expression


Co-expression Network