G137083


Basic Information

Item Value
gene id G137083
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19169748 ~ 19174421 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172324
GTCGGTCCAGGTGAGAGTGAAAGCAgaagcagtgtgtgttgtggcGCAGAGCACAGCAGTCAGTCCAGCGCCAGTTGCTCCTCTGCAGGCTGAGACAGAGGGCCAgtgtggtgctgctgctgtgagGTGTGTGCTGAGGGCAGTGCTGCTGTCCAGACCCCCCGACTGCACACTACACtccagggagggagagataagTGGTTCCTGAGGGACGAGCAGACACCTCCAGGGCAGGGAGAGCAGGAATGGCTAACCCCAGCAGTCTCCTGTCTGAGGAGCAGTTCCAGTGCTCCATATGTCTGGATATATTCACCAGACCAGTCTCCACTCCCTGTGGGCACAACTTCTGCATGGCGTGTATTGGAGGGTACTGGgacagcagtgctgtgtgccAGTGCCCACTGTGTAAGGAGACTTTCTATAGGAGGCCTGATCTGCGCATTAACACAACCTTAAAGGAAATCAGTGAAAAGATCAGAACCAGACTCAATCTTTCTGAGGAGCGCTCTGCTCAGCCTGGAGAAGTGCCCTGTGATTTCTGCACTGGGAGGAAGCTCAGGGCTGTGAAATCCTGCCTGGTGTGTCTGGCCTCTTACTGTCAGATTCACCTGGAGCCCCATCAGAGAGTCAATATGCTAATGAGACACAAATTGATTGAGCCTGTGAGTGACATTGAAGACAGGCTGTGCAAGAAGCACCAGAGAGTCCTGGAGGTGTTCTGTAGAGAAGACCAGATCTGTGTTTGTCAGTTCTGCACTGAGACAGACCACCGCAGACACGCTACTGTCTCCTTAGAAGAGGAATTCAGAAGAAAGAAGGCTCAGCTGAGGGAGACTGAGGCAGAAGTGCAACAGAAGATCCAGGACAGACTGAAGAAGGTGGAGGAGATCAGACAGGCAGTGGAGCTCAGCAGA

Function

GO:

id name namespace
GO:0016137 glycoside metabolic process biological_process
GO:0016139 glycoside catabolic process biological_process
GO:1901658 glycosyl compound catabolic process biological_process

KEGG:

id description
ko00603 Glycosphingolipid biosynthesis - globo and isoglobo series

RNA

RNA id representative length rna type GC content exon number start site end site
TU172324 True 914 TUCP 0.54 3 19169748 19174421

Neighbor

gene id symbol gene type direction distance location
AMCG00012474 onecut1,LOC107746960 coding upstream 60245 19100319 ~ 19109503 (+)
AMCG00012470 NA coding upstream 103835 19054640 ~ 19065913 (+)
AMCG00012465 LOC107732464 coding upstream 232270 18933584 ~ 18937478 (+)
AMCG00012464 tnfaip8l2,LOC106605333,LOC105031250,LOC106580940,LOC107587822 coding upstream 244699 18915218 ~ 18925049 (+)
AMCG00012466 LOC107741773,LOC108262134,LOC106580947,LOC108441933,LOC106605334 coding upstream 261014 18896414 ~ 18908734 (+)
AMCG00012476 NA coding downstream 96889 19271310 ~ 19273160 (+)
AMCG00012479 NA coding downstream 103295 19277716 ~ 19294096 (+)
AMCG00012481 NA coding downstream 126392 19300813 ~ 19333427 (+)
AMCG00012483 NA coding downstream 286870 19461291 ~ 19467495 (+)
AMCG00012484 NA coding downstream 301961 19476382 ~ 19483546 (+)
G137080 NA non-coding upstream 8605 19139125 ~ 19161143 (+)
G137079 NA non-coding upstream 43435 19125841 ~ 19126313 (+)
G137074 NA non-coding upstream 54886 19112770 ~ 19114862 (+)
G137027 NA non-coding upstream 143743 19020158 ~ 19026005 (+)
G137031 NA non-coding upstream 197682 18964534 ~ 18972066 (+)
G137110 NA non-coding downstream 59989 19234410 ~ 19236788 (+)
G137130 NA non-coding downstream 147585 19322006 ~ 19322259 (+)
G137144 NA non-coding downstream 186923 19361344 ~ 19395753 (+)
G137155 NA non-coding downstream 249132 19423553 ~ 19425538 (+)
G137177 NA non-coding downstream 330462 19504883 ~ 19509198 (+)
AMCG00012471 NA other upstream 115919 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 625258 18539545 ~ 18544490 (+)
G136864 psmb4 other upstream 781442 18385289 ~ 18388306 (+)
AMCG00012439 NA other upstream 1035367 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 1265938 17902832 ~ 17903810 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 63268 19237689 ~ 19238958 (+)
AMCG00012480 NA other downstream 157907 19332328 ~ 19350202 (+)
G137252 NA other downstream 640504 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 716746 19891167 ~ 19895599 (+)
AMCG00012512 NA other downstream 1072230 20246651 ~ 20270919 (+)

Expression


Co-expression Network