G137080


Basic Information

Item Value
gene id G137080
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 19139125 ~ 19161143 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU172318
TGAGACTGGGAGACAGACGACAGGCTCTCCCTGACAATCCAGAGAGATTTGATCCTTGTTTCTGTGTCCTGGGAAAGGAGGGTTTCAGTTCAGGGAGACACTactgggaggtggaggtgggggagaAGATTGAATGGGATTTAGGAGTCGCCAGAGAGTCCATCAACAGGAAGGGAGCGATTACACTGAGCCATGAGAGAGGGTATTGGTCTTTGGTTCTGAGGAATGGGGATGAGTACTGGGCTAATGCTAACCCCCCTGTCCTCCTTCCCCTGAGCCTGAAGCCCCAGAAGGTGGGGGTGTTTGTGGATTATGATGGGGGGCAGGTCTCCTTTTACAATGTGGAGGCCAGGTctcatatatacacattcactGACACCTTCACTGAGAAACTCTATCCATACTTCAGCCCCTATTGCAATGTgggatttaaaaacacagccCCACTGATCATCTCTCCTGTCCGTCACTGTTACATCCCCATCCTCTTGTAAATCTGTGTGGTGCCATTTGTCTTCGCTTTGTCTGTAGTTCTCTTTTAGGTGCTATTTACTGCTGAAGAGCTCTTTTGGGTGTGGGGATTTGCTGCTGAAGAGTGGGTGTGTACTTGTCCCCGTTGGTTCCCCCATCCTTTGTCGCCGGCCAATCGCAGAAGGAGCCATCACCCATATATACCTGTGTTGTTTAGTGTGTGAGAAGACTGCTATGGTGGTGTTTTGGTTTGTCTCCCCTggctctgtttctgtttcccaTCAGTTTCCTGTCATTATGGAGAAGGGCTAGATAAGAAACCCATGGGTATACTCTGCATCATGTAGCTGTTTGTTATATACACTAGGTTTGGAGCGAGTGGATGTCACCATCTTTCTGTAGCAGGTAGGTTAGATTGAGGGCTTAGTATTGTTGTAGGTAGGGATAGAGGTGTAGGGAAGTCAGGGCCTTTTTGTTACTTTGTTGTTTTGGCAGATCATTCGCATGGCCCTTCTCCTACCCTTTGTCAGTTAACCACCACCCCTTTATTTACATTACttgtctattattatttgtaaaacctGCCTATTGTTATATTGTGCAACCGTGTCCCATGTTCTATATATGTAAGCCTTTTTGTAATTAACTTTCACTAACTTTGCTAGCAAGTAGTTCATTACTtgttaaaggaaataaaatcctTCTTTTGGACTTGTTTTGTTGCCTGGTACATTTGTTAGTGCACTCGCCATTACATTTGTCCTTCCtaccccagtgtgtgtgtgcatgtgcggtTATGTTAGCCTCCACTCTACCATCGGAGTGAGAAGCGTAACACAGACTGAATGAGGCAGATTCTCTGTGGGGGGGCAGCAGGAGCAGTGACCAGAGAGAGTAATAACAGTGATCTTCAGATTAGTGCTCTCCAGCCCCAGAGGGAGTCATTCGGGGTGTGAGGGGCATCAGTCACAGTTCAGGTGCTGCTGTCTGTGAGCCCCACACTGGTGTAGAGCAGTAAGGAGCTCAGAGCTGCACACACTGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU172318 True 1514 lncRNA 0.47 2 19139125 19161143

Neighbor

gene id symbol gene type direction distance location
AMCG00012474 onecut1,LOC107746960 coding upstream 29622 19100319 ~ 19109503 (+)
AMCG00012470 NA coding upstream 73212 19054640 ~ 19065913 (+)
AMCG00012465 LOC107732464 coding upstream 201647 18933584 ~ 18937478 (+)
AMCG00012464 tnfaip8l2,LOC106605333,LOC105031250,LOC106580940,LOC107587822 coding upstream 214076 18915218 ~ 18925049 (+)
AMCG00012466 LOC107741773,LOC108262134,LOC106580947,LOC108441933,LOC106605334 coding upstream 230391 18896414 ~ 18908734 (+)
AMCG00012476 NA coding downstream 110167 19271310 ~ 19273160 (+)
AMCG00012479 NA coding downstream 116573 19277716 ~ 19294096 (+)
AMCG00012481 NA coding downstream 139670 19300813 ~ 19333427 (+)
AMCG00012483 NA coding downstream 300148 19461291 ~ 19467495 (+)
AMCG00012484 NA coding downstream 315239 19476382 ~ 19483546 (+)
G137079 NA non-coding upstream 12812 19125841 ~ 19126313 (+)
G137074 NA non-coding upstream 24263 19112770 ~ 19114862 (+)
G137027 NA non-coding upstream 113120 19020158 ~ 19026005 (+)
G137031 NA non-coding upstream 167059 18964534 ~ 18972066 (+)
G137016 NA non-coding upstream 205877 18932424 ~ 18933248 (+)
G137110 NA non-coding downstream 73267 19234410 ~ 19236788 (+)
G137130 NA non-coding downstream 160863 19322006 ~ 19322259 (+)
G137144 NA non-coding downstream 200201 19361344 ~ 19395753 (+)
G137155 NA non-coding downstream 262410 19423553 ~ 19425538 (+)
G137177 NA non-coding downstream 343740 19504883 ~ 19509198 (+)
AMCG00012471 NA other upstream 85296 19047497 ~ 19053829 (+)
AMCG00012460 NA other upstream 594635 18539545 ~ 18544490 (+)
G136864 psmb4 other upstream 750819 18385289 ~ 18388306 (+)
AMCG00012439 NA other upstream 1004744 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 1235315 17902832 ~ 17903810 (+)
G137083 NA other downstream 8605 19169748 ~ 19174421 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 76546 19237689 ~ 19238958 (+)
AMCG00012480 NA other downstream 171185 19332328 ~ 19350202 (+)
G137252 NA other downstream 653782 19814925 ~ 19815617 (+)
G137265 txnip,LOC106943536,LOC106570200,LOC105012721 other downstream 730024 19891167 ~ 19895599 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000105_02880777_02881928 BTR06 coding CI01000105 null 2880746 ~ 2881928 (-)