AMCG00012466 (LOC107741773,LOC108262134,LOC106580947,LOC108441933,LOC106605334)


Basic Information

Item Value
gene id AMCG00012466
gene name LOC107741773,LOC108262134,LOC106580947,LOC108441933,LOC106605334
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030138.1
NCBI id CM030138.1
chromosome length 24262032
location 18896414 ~ 18908734 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012466
ATGTACGGCCTGTACCTGGAAGCGGTGAACGACTACATCAACGAGTCGTACGGCGAGGACGTGTGGCGGCTCATCGAGGCCCGGGCCGAAATCCCACACCTCAAGTTTGTCCGCCATCAGATGTACAACGATAACCTGATCCTGCGTCTGGCCAAAGCCGCGGGGGAGGTCCTGGGGAAGACGCACGACGAGCTGATGTATGCCTTCGGGGTCTACATGGTCAAGAGGATCGGCAACTATGGCTACGAGAGGATCCTCAAGGTCCTGGGGCGTAACGTTCGAGACTTCATCAATGAGCTGGACAACCTGCATGAGTATTTCCGCTTCTCCTTCCCCAAAGTGCAGCCACCCAGCTTCTGCGTGGAGGAGGAGTGCGAGACCAGCCTCACCCTACACTACCGCAGCACCAGAAAGGGCTTCACACAGTTTGTCAAGGGACAGCTTTCCCAAGTGGGGCGTCAGTTCTACAACACAGACATCGAGGTGGAGATCCTGTCAAAGGAGGAAACGGAGAAGATGACTTATGTGGTCAGTAGGCTTGAGTTTGACTTTCGAGTTCAGCACCGCATGCCCCAGCAGAAGACAGCGCCTGGCTATGAGAAGCTGCCCATGAAGAGGGGCATCTTCTTTGACATGTTCCCCTTCAGCGTGATCTTCCGCCGGGACATGACCATGTACCGCATCGGGGACGGCCTCAAGGAGGTCTTCTCCGACCTGCAGGGCAAGAAGTTCAATGAGGAGTTCACTCTGGTGCGGCCCATGCTGGAGTTCAGCTGGGACAATATCTACACCCACCTGAACAACGTGTTTGAGCTCCTCTCCAAAGCCGTGGATATGAGGGAGCCCCCCAAGAAACCCCTGCACCTTAAGGGTCAGATGAAGTATGTCCCCCAATGGGATTCCCTCATCTTCCTCGGCACGCCTATTATCGAGACCGTGGAAGACATGATCAAAATGGGGGTGTACGTGAATGACCTGAACCTTCACGACTCCAGCCGAGAGCTCATCTTGGCTGGGACGCAGCAGTCTGCAGAGCTCCAGTTAGCACTTGACCAGGAGCAGCAGAAGTACGCCCAACTGCAGGAGATCATCAAGAAGTTGGACGAGGAGAAGAAGAGGGGCGACTCTCTGCTGTACGCCATGATCCCCAAAGCGGTGGCCGACCGTCTGCGCAAGGGCATCGGGGCGCTGGAGACGTGCCAGGTGTTCCCGGACGTGACGATCCTCTTCAGTGATGTGGTGAAGTTCAACGAGATCTGCATCCACATCACGCCCATGCAGGTGGTGGACATGCTGAACGAGATCTACATAGTGTTCGACACATTGAGCGAGAAGCACAACGTCTATAAGGTGGAGACGATCCGAGATGCCTACATGGTGGTGGCGGGGGTCCCCAACAAGACCACCTTCCACGCCCACCACATCTGCGACATGGCTCTCGACATGCTGAGCTCCATCGACCACCTCAAGGACCCTTCCACCGGGGACAACATTCAGATCCGAGTGGGGATCCACTCTGGGATGGTGGTGGCGGGGGTGggaATGCAAATCCACATCAGCCAGACCACCAAGGACCACCTTGAACACGAGCCGTACATCATCGAGGAGAGAGGCAAGATCTTCGTCAAGttttttaatagcCCTCTAATCTCTGAATCGCACAGCCAGCGTCAACATGTTAGCATGTGGGTAGCGAGCCCGTACATGAGGGGAAATGTGTGGCACAGTAGAGTGTTCTGGGCCCCAGATGTGCCCGAAACAGAGGGCGAACCCACGGATTAG

Function

NR:

description
PREDICTED: soluble guanylate cyclase 88E-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012466 True 1782 mRNA 0.56 14 18896414 18908734

Neighbor

gene id symbol gene type direction distance location
AMCG00012458 NA coding upstream 343600 18545578 ~ 18552814 (+)
AMCG00012456 NA coding upstream 383808 18493584 ~ 18512606 (+)
AMCG00012457 NA coding upstream 404943 18476711 ~ 18491471 (+)
AMCG00012453 NA coding upstream 429829 18445111 ~ 18466585 (+)
AMCG00012452 pi4kb,LOC107588477,LOC107556110 coding upstream 454063 18416963 ~ 18442351 (+)
AMCG00012464 tnfaip8l2,LOC106605333,LOC105031250,LOC106580940,LOC107587822 coding downstream 6484 18915218 ~ 18925049 (+)
AMCG00012465 LOC107732464 coding downstream 24850 18933584 ~ 18937478 (+)
AMCG00012470 NA coding downstream 145906 19054640 ~ 19065913 (+)
AMCG00012474 onecut1,LOC107746960 coding downstream 191585 19100319 ~ 19109503 (+)
AMCG00012476 NA coding downstream 362576 19271310 ~ 19273160 (+)
G136969 NA non-coding upstream 242816 18615898 ~ 18653598 (+)
G136873 NA non-coding upstream 421498 18473233 ~ 18474916 (+)
G136866 NA non-coding upstream 425630 18433570 ~ 18470784 (+)
G136848 NA non-coding upstream 579338 18295215 ~ 18317076 (+)
G136842 NA non-coding upstream 626907 18261897 ~ 18269507 (+)
G137016 NA non-coding downstream 23690 18932424 ~ 18933248 (+)
G137031 NA non-coding downstream 55800 18964534 ~ 18972066 (+)
G137027 NA non-coding downstream 111424 19020158 ~ 19026005 (+)
G137074 NA non-coding downstream 204036 19112770 ~ 19114862 (+)
G137079 NA non-coding downstream 217107 19125841 ~ 19126313 (+)
AMCG00012460 NA other upstream 351924 18539545 ~ 18544490 (+)
G136864 psmb4 other upstream 508108 18385289 ~ 18388306 (+)
AMCG00012439 NA other upstream 762033 18130284 ~ 18134381 (+)
G136720 cct3,tcpg,LOC107597996,LOC107587818,LOC107741740,LOC107671634,LOC107704884 other upstream 992604 17902832 ~ 17903810 (+)
G136658 NA other upstream 1052493 17840933 ~ 17843921 (+)
AMCG00012471 NA other downstream 138763 19047497 ~ 19053829 (+)
G137083 NA other downstream 261014 19169748 ~ 19174421 (+)
G137111 ctsk,LOC107689854,LOC107587836,LOC107741754,LOC108441922 other downstream 328955 19237689 ~ 19238958 (+)
AMCG00012480 NA other downstream 423594 19332328 ~ 19350202 (+)
G137252 NA other downstream 906191 19814925 ~ 19815617 (+)

Expression


Co-expression Network